LXL04_030512 | RubberDandelionOmics

Gene overview

LXL04_030512

Reference: OH-1004 Chr: Chr06 Coordinates: 117642643-117643377 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · LXL04_030512|LXL04_030512|OH1004|cDNA

ATGAGTTCTGTGGTGGGAGTCAGAAACAATGGCGGTGGTCGGAGGGAACAGAAGAGGCATGCCGCCCATGCAAGCTCAAGGAAAGGCTGCATGAAAGGCAAAGGAGGTCCTGAGAATGGTTCTTGCACGTACAAAGGTGTTCGACAGCGGACCTGGGGCCGGTGGGTGTCAGAAATCCGTGAACCCAACGGCGGAAACCGTCTCTGGCTGGGGACCTTCAACTCCTCCCATGAAGCCGCCATGGCGTACGATGCTGCCGC...

CDS

Download CDS FASTA

735 bp · LXL04_030512|LXL04_030512|OH1004|CDS

ATGAGTTCTGTGGTGGGAGTCAGAAACAATGGCGGTGGTCGGAGGGAACAGAAGAGGCATGCCGCCCATGCAAGCTCAAGGAAAGGCTGCATGAAAGGCAAAGGAGGTCCTGAGAATGGTTCTTGCACGTACAAAGGTGTTCGACAGCGGACCTGGGGCCGGTGGGTGTCAGAAATCCGTGAACCCAACGGCGGAAACCGTCTCTGGCTGGGGACCTTCAACTCCTCCCATGAAGCCGCCATGGCGTACGATGCTGCCGC...

Protein

Download Protein FASTA

244 aa · LXL04_030512|LXL04_030512|OH1004|PROTEIN

MSSVVGVRNNGGGRREQKRHAAHASSRKGCMKGKGGPENGSCTYKGVRQRTWGRWVSEIREPNGGNRLWLGTFNSSHEAAMAYDAAARKLYGADARLNLPDENSVPPSGPTASKRARALAAAAAEEAEYNRLLLEIKMKQEFEMQIQMQMYMIMVNQQQMQMYLEGGGVAGNIINKNAIDENVVGFESAFKKLNSNLPEFDDSPMWVEAASTMDYQSQAICDPGIAASTFDDGVGIELNHPLVV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030512`
TK1151 ID	TkA08G112730
OH-1004 ID	LXL04_030512
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	59.500
Protein coverage (%)	TK1151 88.800 / OH-1004 91.393 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030512

Location Chr06:117642643-117643377 (+)

Description Similar to DREB2D: Dehydration-responsive element-binding protein 2D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75490`	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release
`At2g40340`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release
`At5g18450`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release
`At2g40350`	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2WL19`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030512 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006950 response to stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010286 heat acclimation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G75490

ath:AT2G40340

ath:AT2G40350

ath:AT5G18450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · LXL04_030512 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_030512 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_030512 · OH-1004

Endoplasmic reticulum0.014

Rank 4 · LXL04_030512 · OH-1004

Plastid0.013

Rank 5 · LXL04_030512 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP244-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030512	`PF00847.27`	AP2	44	92	7.1e-14	52.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LQZ2`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 2D	74.118%	Swiss-Prot	weak database homology
`Q8LFR2`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 2C	57.265%	Swiss-Prot	weak database homology
`P61827`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 2G	79.730%	Swiss-Prot	weak database homology
`Q9SIZ0`	Arabidopsis thaliana	Putative dehydration-responsive element-binding protein 2H	67.033%	Swiss-Prot	weak database homology
`A2WL19`	Oryza sativa subsp. indica	Dehydration-responsive element-binding protein 2A	60.000%	Swiss-Prot	weak database homology

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