LXL04_030377 | RubberDandelionOmics

Gene overview

LXL04_030377

Reference: OH-1004 Chr: Chr06 Coordinates: 115029781-115034416 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1524 bp · LXL04_030377|LXL04_030377|OH1004|cDNA

ATGGTTAGGGTTACGGTTTCTGATAGCCTATGTCCTGTGAGTTCGAGAGGTGGACGGGGAAGAACCGAAGAAGTAGAAATGGAGCTGTCTTCCTCAGATCTCGAGCTGTCTTCCCAAGATCTCGAGCTCCCTCTCCAATTCTCAGCTGTTTTACGGTTCACAAACGTATTTCCGGCGACAATCGAGCAGTCTTCCTCAGATCTCGAGCTGTCTTCCTCAGATCTCGAGTTGTCTTCCTCAGATCTCGAAATGTCTCTCCG...

CDS

Download CDS FASTA

1524 bp · LXL04_030377|LXL04_030377|OH1004|CDS

ATGGTTAGGGTTACGGTTTCTGATAGCCTATGTCCTGTGAGTTCGAGAGGTGGACGGGGAAGAACCGAAGAAGTAGAAATGGAGCTGTCTTCCTCAGATCTCGAGCTGTCTTCCCAAGATCTCGAGCTCCCTCTCCAATTCTCAGCTGTTTTACGGTTCACAAACGTATTTCCGGCGACAATCGAGCAGTCTTCCTCAGATCTCGAGCTGTCTTCCTCAGATCTCGAGTTGTCTTCCTCAGATCTCGAAATGTCTCTCCG...

Protein

Download Protein FASTA

507 aa · LXL04_030377|LXL04_030377|OH1004|PROTEIN

MVRVTVSDSLCPVSSRGGRGRTEEVEMELSSSDLELSSQDLELPLQFSAVLRFTNVFPATIEQSSSDLELSSSDLELSSSDLEMSLRFSAISAARNRNRVNPQIYEVGRTNYQPHESRILGCCILDDEAFPISPCFISSSTLRSSLIMASDYAKNIVAELESASQLRAAGFFITRRPWLDLYGVNVRPVAPFGSTCSKPVVDLSLIHRCLPDELLFEIFARMTPYNLGKAACVCRKWRNTVRNPVFWRNACLKTWQISGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030377`
TK1151 ID	TkA07G400380
OH-1004 ID	LXL04_030377
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.600
Protein coverage (%)	TK1151 96.070 / OH-1004 89.941 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030377

Location Chr06:115029781-115034416 (-)

Description Similar to SKIP32: F-box protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21760`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	The evolutionarily conserved Arabidopsis thaliana F-box protein AtFBP7 is required for efficient translation during temperature stress.2007 · DOI: 10.1016/j.gene.2006.11.016

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030377 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006417 regulation of translation Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0032006 regulation of TOR signaling Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0045087 innate immune response Biological Process

GO:0070936 protein K48-linked ubiquitination Biological Process

GO:0000151 ubiquitin ligase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G21760

bta:511798

hsa:26268

mmu:71538

rno:300849

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.442

Rank 1 · LXL04_030377 · OH-1004

Cytoplasm0.422

Rank 2 · LXL04_030377 · OH-1004

Cell membrane0.100

Rank 3 · LXL04_030377 · OH-1004

Mitochondrion0.084

Rank 4 · LXL04_030377 · OH-1004

Endoplasmic reticulum0.071

Rank 5 · LXL04_030377 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box209-248 aa

PF12937.13F-box-like209-252 aa

PF19270.5FBO_C264-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030377	`PF00646.39`	F-box	209	248	2.1e-12	47.1
LXL04_030377	`PF12937.13`	F-box-like	209	252	2.2e-12	47.2
LXL04_030377	`PF19270.5`	FBO_C	264	457	1.2e-90	303.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XI00`	Arabidopsis thaliana	F-box protein 7	72.347%	Swiss-Prot	moderate database homology

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