LXL04_027362 | RubberDandelionOmics

Gene overview

LXL04_027362

Reference: OH-1004 Chr: Chr06 Coordinates: 14277795-14281474 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1308 bp · LXL04_027362|LXL04_027362|OH1004|cDNA

ATGATGGAAGAAGGTAGAATTCCCCCAAAACGGATAAAATTCCAAGAAATCGTAGAGGAGTGGAAAGAAGAAGATCGATTCAGTGCCTTGCCAGATTGCTTGCTTATTAAGATCCTTTCTCATTTACCCTCCACAATTCACGCCATTAGAACAGTGCTCCGACTTCATCGGCAAACCCTAACTCAATGTCGCCAACTGAAGCTCAAGAGATTCCAAGTAACTGCTAGTTATGATACTCCATATGAATCGCAAGTTAGCAA...

CDS

Download CDS FASTA

1308 bp · LXL04_027362|LXL04_027362|OH1004|CDS

ATGATGGAAGAAGGTAGAATTCCCCCAAAACGGATAAAATTCCAAGAAATCGTAGAGGAGTGGAAAGAAGAAGATCGATTCAGTGCCTTGCCAGATTGCTTGCTTATTAAGATCCTTTCTCATTTACCCTCCACAATTCACGCCATTAGAACAGTGCTCCGACTTCATCGGCAAACCCTAACTCAATGTCGCCAACTGAAGCTCAAGAGATTCCAAGTAACTGCTAGTTATGATACTCCATATGAATCGCAAGTTAGCAA...

Protein

Download Protein FASTA

435 aa · LXL04_027362|LXL04_027362|OH1004|PROTEIN

MMEEGRIPPKRIKFQEIVEEWKEEDRFSALPDCLLIKILSHLPSTIHAIRTVLRLHRQTLTQCRQLKLKRFQVTASYDTPYESQVSNWIRYAFVFISSCCAMEMVEEGRVPPKRIRFQAIVEEGKEDRFSALPDSLLIEILSRLPSTEYAIRTGALSKRCKHLWTLVPTLIFNHLAENPLWFDIVDKTLTQCRQLKLKRFEVDTSYDIRFQSQVNDWIRYAIRCNVEELNLSLWSNGLKAEFLLDQSFFDCSFFTDLVLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027362`
TK1151 ID	TkA07G052890
OH-1004 ID	LXL04_027362
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 76.782 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027362

Location Chr06:14277795-14281474 (+)

Description Similar to At5g03100: F-box protein At5g03100

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release
`At1g49610`	Putative F-box protein At1g49610.	No verified direct reference in this release
`At3g18150`	Putative F-box/LRR-repeat protein At3g18150.	No verified direct reference in this release
`At5g02930`	Putative F-box/LRR-repeat protein At5g02930.	No verified direct reference in this release
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027362 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT1G49610

ath:AT3G18150

ath:AT5G02920

ath:AT5G02930

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.753

Rank 1 · LXL04_027362 · OH-1004

Cytoplasm0.314

Rank 2 · LXL04_027362 · OH-1004

Endoplasmic reticulum0.042

Rank 3 · LXL04_027362 · OH-1004

Cell membrane0.038

Rank 4 · LXL04_027362 · OH-1004

Plastid0.019

Rank 5 · LXL04_027362 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box129-168 aa

PF23622.2LRR_At1g61320_AtMIF1196-360 aa

PF24758.2LRR_At5g56370215-355 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027362	`PF00646.39`	F-box	129	168	7.5e-08	32.7
LXL04_027362	`PF23622.2`	LRR_At1g61320_AtMIF1	196	360	8.9e-13	49.1
LXL04_027362	`PF24758.2`	LRR_At5g56370	215	355	6.3e-12	46.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	32.484%	Swiss-Prot	moderate database homology
`Q9FX89`	Arabidopsis thaliana	Putative F-box protein At1g49610	33.441%	Swiss-Prot	moderate database homology
`Q9LV26`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g18150	33.030%	Swiss-Prot	moderate database homology
`Q9LYZ2`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02930	32.567%	Swiss-Prot	moderate database homology
`Q1PE04`	Arabidopsis thaliana	F-box/LRR-repeat protein 25	33.816%	Swiss-Prot	weak database homology

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