LXL04_027297 | RubberDandelionOmics

Gene overview

LXL04_027297

Reference: OH-1004 Chr: Chr06 Coordinates: 12770579-12771721 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1143 bp · LXL04_027297|LXL04_027297|OH1004|cDNA

ATGGCGACTAAAAGAGACTTACACGAAGAAGATCTGGAGAAGAAAGACGCAACAATGGAAGACAGACTCACTAATTTACCCGAAGATCTAAAGCTTTGTATTCTCTCTTCTCTTGACACAAAACACGCGGTCCTAACATCGATCCTATCAAAATCATGGCTTCCTTTATGGACTCGAATCCCTGTTCTAGAATTCAACTACTTTGCTTTCCGTCAACTCCCAGGTTTCCAAGATTTCGTCAAGCAACTGTTGTGTCTTCG...

CDS

Download CDS FASTA

1143 bp · LXL04_027297|LXL04_027297|OH1004|CDS

ATGGCGACTAAAAGAGACTTACACGAAGAAGATCTGGAGAAGAAAGACGCAACAATGGAAGACAGACTCACTAATTTACCCGAAGATCTAAAGCTTTGTATTCTCTCTTCTCTTGACACAAAACACGCGGTCCTAACATCGATCCTATCAAAATCATGGCTTCCTTTATGGACTCGAATCCCTGTTCTAGAATTCAACTACTTTGCTTTCCGTCAACTCCCAGGTTTCCAAGATTTCGTCAAGCAACTGTTGTGTCTTCG...

Protein

Download Protein FASTA

380 aa · LXL04_027297|LXL04_027297|OH1004|PROTEIN

MATKRDLHEEDLEKKDATMEDRLTNLPEDLKLCILSSLDTKHAVLTSILSKSWLPLWTRIPVLEFNYFAFRQLPGFQDFVKQLLCLRDQTAKLQRLSLTGIGTCDVKFIKNFLDYAFNHSVEELEVKICQICKYHSWPVYLNTFCDSLKSLKLQSVIEMSCPFLGAISRFKNLRVLYLQRALITNLEPFLGFPVLEKLTLANCDINTMGKTLSVHGPNLSYLKISDCRSFNCCELTTPNLRFFVYHGSDFPQLRAYGLGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027297`
TK1151 ID	TkA07G045090
OH-1004 ID	LXL04_027297
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 95.263 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027297

Location Chr06:12770579-12771721 (-)

Description Similar to At5g53840: F-box/FBD/LRR-repeat protein At5g53840

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53840`	F-box/FBD/LRR-repeat protein At5g53840.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At3g26922`	F-box/LRR-repeat protein At3g26922.	No verified direct reference in this release
`At3g51530`	F-box/FBD/LRR-repeat protein At3g51530.	No verified direct reference in this release
`At5g22700`	F-box/FBD/LRR-repeat protein At5g22700.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027297 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G04230

ath:AT3G26922

ath:AT3G51530

ath:AT5G22700

ath:AT5G53840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.865

Rank 1 · LXL04_027297 · OH-1004

Cytoplasm0.180

Rank 2 · LXL04_027297 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_027297 · OH-1004

Endoplasmic reticulum0.033

Rank 4 · LXL04_027297 · OH-1004

Plastid0.015

Rank 5 · LXL04_027297 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF191-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027297	`PF23622.2`	LRR_At1g61320_AtMIF1	91	253	4.1e-10	40.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGQ3`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g53840	25.887%	Swiss-Prot	weak database homology
`Q6NKX3`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At2g04230	32.189%	Swiss-Prot	moderate database homology
`Q9LJF8`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g26922	26.210%	Swiss-Prot	weak database homology
`Q501E9`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At3g51530	33.488%	Swiss-Prot	moderate database homology
`Q9FNJ1`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g22700	31.628%	Swiss-Prot	moderate database homology

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