LXL04_027147 | RubberDandelionOmics

Gene overview

LXL04_027147

Reference: OH-1004 Chr: Chr06 Coordinates: 9621303-9623077 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

999 bp · LXL04_027147|LXL04_027147|OH1004|cDNA

ATGGATTCTCATAACAAAAAAAAGCCGGCTGCTAGTCCTAATAATCAAGCTGTTGATGATAGTAAGCTTACCAAAATCGGCATTGGTTGGATGATGGCTTCAACTACTGCAAATGGCGGCACTCAAAAAGATGTTACTGTCGATTGGGAAATCGTTGAATTTACAAAGGAAGAGGAAGTGGTCGATGTGGAATTCAATGATAAGTTTGAAGGGAAAACGTTTAAAGATCTTGTTAACGAAAATGATCTATTGCATATAAT...

CDS

Download CDS FASTA

999 bp · LXL04_027147|LXL04_027147|OH1004|CDS

ATGGATTCTCATAACAAAAAAAAGCCGGCTGCTAGTCCTAATAATCAAGCTGTTGATGATAGTAAGCTTACCAAAATCGGCATTGGTTGGATGATGGCTTCAACTACTGCAAATGGCGGCACTCAAAAAGATGTTACTGTCGATTGGGAAATCGTTGAATTTACAAAGGAAGAGGAAGTGGTCGATGTGGAATTCAATGATAAGTTTGAAGGGAAAACGTTTAAAGATCTTGTTAACGAAAATGATCTATTGCATATAAT...

Protein

Download Protein FASTA

332 aa · LXL04_027147|LXL04_027147|OH1004|PROTEIN

MDSHNKKKPAASPNNQAVDDSKLTKIGIGWMMASTTANGGTQKDVTVDWEIVEFTKEEEVVDVEFNDKFEGKTFKDLVNENDLLHIMLDSSERNRKEAESTMKLKEEDLKSTISKLENNISSLKQSLAIEESQKLDAIDQLKKQKEANTTLKKDQDSLKEELQDVKQYSLTAYEKVKEHEDTYKRWQEYNKSLQQYNTKLQNEIKTTTDANKHVEKEKATLLENHTTLKKLLEDEVKEKATSVKEVQVLRGELQRVNEDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027147`
TK1151 ID	TkA07G035370
OH-1004 ID	LXL04_027147
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 90.964 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027147

Location Chr06:9621303-9623077 (-)

Description Similar to KIN14C: Kinesin-like protein KIN-14C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21270`	Kinesin that supports microtubule movement in an ATP- dependent manner and has a minus-end directed polarity.	The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis.2002 · DOI: 10.1242/dev.129.10.2401 Arabidopsis thaliana protein, ATK1, is a minus-end directed kinesin that exhibits non-processive movement.2002 · DOI: 10.1002/cm.10045
`At4g05190`	Kinesin that supports microtubule movement in an ATP- dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein.	A minus-end-directed kinesin with plus-end tracking protein activity is involved in spindle morphogenesis.2005 · DOI: 10.1091/mbc.e04-10-0935 The kinesin ATK5 functions in early spindle assembly in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047613
`At5g54670`	Kinesin-like protein KIN-14N.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0105700`	Kinesin-like protein KIN-14N.	No verified direct reference in this release
`Os04g0629700`	Kinesin-like protein KIN-14H.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027147 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0009971 anastral spindle assembly involved in male meiosis Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0000776 kinetochore Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005819 spindle Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005872 minus-end kinesin complex Cellular Component

KEGG gene cross-reference

ath:AT4G05190

ath:AT4G21270

ath:AT5G54670

dosa:Os04g0629700

dosa:Os07g0105700

osa:4337093

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.633

Rank 1 · LXL04_027147 · OH-1004

Nucleus0.251

Rank 2 · LXL04_027147 · OH-1004

Golgi apparatus0.059

Rank 3 · LXL04_027147 · OH-1004

Cell membrane0.056

Rank 4 · LXL04_027147 · OH-1004

Mitochondrion0.055

Rank 5 · LXL04_027147 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q07970`	Arabidopsis thaliana	Kinesin-like protein KIN-14C	34.946%	Swiss-Prot	moderate database homology
`F4JGP4`	Arabidopsis thaliana	Kinesin-like protein KIN-14D	41.833%	Swiss-Prot	moderate database homology
`P46875`	Arabidopsis thaliana	Kinesin-like protein KIN-14N	33.460%	Swiss-Prot	moderate database homology
`A3BFT0`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14N	34.902%	Swiss-Prot	moderate database homology
`Q0J9V3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14H	33.190%	Swiss-Prot	moderate database homology

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