LXL04_027145 | RubberDandelionOmics

Gene overview

LXL04_027145

Reference: OH-1004 Chr: Chr06 Coordinates: 9575972-9577017 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

831 bp · LXL04_027145|LXL04_027145|OH1004|cDNA

ATGAAAATGCTTATGTTATCCACAATGATGTTCATTATAACGGGAATTATCCAAGTAAACGGTATTACCCATCTAGGTTCCGAATGCTCACAAGCTCCTAACTCAACTCGTAATCCCGTCTATCAACAAAACCTTAGAACCCTTTTGAGTTCGCTAGCCAAGAACACACCTCTACAAGAAGGCAAGTTCTTGAATACAAGTGTCGGGAATAGTTCAAATCAAGTTCACGGTGTAGCATGGTGTCGAGCAGACGTTTCTTC...

CDS

Download CDS FASTA

831 bp · LXL04_027145|LXL04_027145|OH1004|CDS

ATGAAAATGCTTATGTTATCCACAATGATGTTCATTATAACGGGAATTATCCAAGTAAACGGTATTACCCATCTAGGTTCCGAATGCTCACAAGCTCCTAACTCAACTCGTAATCCCGTCTATCAACAAAACCTTAGAACCCTTTTGAGTTCGCTAGCCAAGAACACACCTCTACAAGAAGGCAAGTTCTTGAATACAAGTGTCGGGAATAGTTCAAATCAAGTTCACGGTGTAGCATGGTGTCGAGCAGACGTTTCTTC...

Protein

Download Protein FASTA

276 aa · LXL04_027145|LXL04_027145|OH1004|PROTEIN

MKMLMLSTMMFIITGIIQVNGITHLGSECSQAPNSTRNPVYQQNLRTLLSSLAKNTPLQEGKFLNTSVGNSSNQVHGVAWCRADVSSNTCSECLTRSTSIPLRDCPEIKDLVIWASLCSLRFSNTSFFGELWNSSSSSSSNGHELDEPSVFSRGFAMMEELGRNVSSQPLMFDTSVVDVGNDGKRYGFGQCSRDLSETDCENCFGELLTTYRKFVLNRTGWEMLGVSCGLWYDDVRFDGNYSGLTPTPIGSGGGERWSKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027145`
TK1151 ID	TkA07G035310
OH-1004 ID	LXL04_027145
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.900
Protein coverage (%)	TK1151 97.500 / OH-1004 70.652 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027145

Location Chr06:9575972-9577017 (+)

Description Similar to CRRSP38: Cysteine-rich repeat secretory protein 38

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22060`	Cysteine-rich repeat secretory protein 38.	No verified direct reference in this release
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At3g58310`	Putative cysteine-rich repeat secretory protein 61.	No verified direct reference in this release
`At4g23190`	Cysteine-rich receptor-like protein kinase 11.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027145 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002239 response to oomycetes Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G22060

ath:AT3G58310

ath:AT4G05200

ath:AT4G23190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.844

Rank 1 · LXL04_027145 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_027145 · OH-1004

Cytoplasm0.066

Rank 3 · LXL04_027145 · OH-1004

Extracellular0.040

Rank 4 · LXL04_027145 · OH-1004

Nucleus0.036

Rank 5 · LXL04_027145 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung29-124 aa

PF01657.23Stress-antifung158-233 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027145	`PF01657.23`	Stress-antifung	29	124	1.7e-28	99.8
LXL04_027145	`PF01657.23`	Stress-antifung	158	233	1.7e-28	99.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LRJ9`	Arabidopsis thaliana	Cysteine-rich repeat secretory protein 38	31.064%	Swiss-Prot	moderate database homology
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	28.205%	Swiss-Prot	weak database homology
`Q9M2I5`	Arabidopsis thaliana	Putative cysteine-rich repeat secretory protein 61	26.337%	Swiss-Prot	weak database homology
`Q9ZP16`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 11	26.667%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card