LXL04_026865 | RubberDandelionOmics

Gene overview

LXL04_026865

Reference: OH-1004 Chr: Chr06 Coordinates: 4117167-4120818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1836 bp · LXL04_026865|LXL04_026865|OH1004|cDNA

ATGACAACTTCCTTAAAGGTGGCCGTCATTGGCGCCGGTGTGGCGGGACTAACCGCCGCCCGTGAACTTCAACAGGAATCGCAAAATGTTGTGGTGTTTGAAAAGTCATACCGACTTGGTGGAACATGGGCCTATGATCCAAGAGTGGAGTCTGATCTACTAGGAGTCGACCCAAATAGAGATATTGTTCATGGATCGCTTTATAACTCTATGCGCACAAATCTTCCTCGTGAACTCATGAGCTTCACTGATTTCAAATT...

CDS

Download CDS FASTA

1836 bp · LXL04_026865|LXL04_026865|OH1004|CDS

ATGACAACTTCCTTAAAGGTGGCCGTCATTGGCGCCGGTGTGGCGGGACTAACCGCCGCCCGTGAACTTCAACAGGAATCGCAAAATGTTGTGGTGTTTGAAAAGTCATACCGACTTGGTGGAACATGGGCCTATGATCCAAGAGTGGAGTCTGATCTACTAGGAGTCGACCCAAATAGAGATATTGTTCATGGATCGCTTTATAACTCTATGCGCACAAATCTTCCTCGTGAACTCATGAGCTTCACTGATTTCAAATT...

Protein

Download Protein FASTA

611 aa · LXL04_026865|LXL04_026865|OH1004|PROTEIN

MTTSLKVAVIGAGVAGLTAARELQQESQNVVVFEKSYRLGGTWAYDPRVESDLLGVDPNRDIVHGSLYNSMRTNLPRELMSFTDFKFNEKAPRTKPEVLSEQVFGAREYRIGQIALLVTTMDDPESEASKIHSEYYEGETSEDIESEEESSEDEKAFVVDAELDDCDAEEGSSQQDFKKLFWAASMSTTESAFVGTMEELKDLNKAAYDHLMVRHPESWSRAFFPEGRACESVENGISESFNSVILEARTKPILTMLEEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026865`
TK1151 ID	TkA06G194730
OH-1004 ID	LXL04_026865
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	68.700
Protein coverage (%)	TK1151 79.268 / OH-1004 60.720 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026865

Location Chr06:4117167-4120818 (-)

Description Similar to At1g12160: Flavin-containing monooxygenase FMO GS-OX-like 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12160`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g62620`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g65860`	Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g63370`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release
`At1g63340`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026865 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0033506 glucosinolate biosynthetic process from homomethionine Biological Process

GO:0005634 nucleus Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0004499 N,N-dimethylaniline monooxygenase activity Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

GO:0050661 NADP binding Molecular Function

GO:0080102 3-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function

GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function

GO:0080104 5-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G12160

ath:AT1G62620

ath:AT1G63340

ath:AT1G63370

ath:AT1G65860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · LXL04_026865 · OH-1004

Cytoplasm0.120

Rank 2 · LXL04_026865 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_026865 · OH-1004

Mitochondrion0.015

Rank 4 · LXL04_026865 · OH-1004

Endoplasmic reticulum0.012

Rank 5 · LXL04_026865 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00743.26FMO-like6-93 aa

PF01266.31DAO6-42 aa

PF07992.21Pyr_redox_26-64 aa

PF00890.31FAD_binding_27-44 aa

PF13450.13NAD_binding_89-44 aa

PF04434.23SWIM319-347 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026865	`PF00743.26`	FMO-like	6	93	3e-09	36.6
LXL04_026865	`PF01266.31`	DAO	6	42	1.8e-07	31.7
LXL04_026865	`PF07992.21`	Pyr_redox_2	6	64	3.1e-06	27.6
LXL04_026865	`PF00890.31`	FAD_binding_2	7	44	1.1e-06	28.9
LXL04_026865	`PF13450.13`	NAD_binding_8	9	44	3.3e-08	34.4
LXL04_026865	`PF04434.23`	SWIM	319	347	5.8e-09	36.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FWW6`	Arabidopsis thaliana	Flavin-containing monooxygenase FMO GS-OX-like 1	49.107%	Swiss-Prot	weak database homology
`Q9SXD5`	Arabidopsis thaliana	Flavin-containing monooxygenase FMO GS-OX-like 3	41.667%	Swiss-Prot	weak database homology
`Q9SS04`	Arabidopsis thaliana	Flavin-containing monooxygenase FMO GS-OX1	47.458%	Swiss-Prot	weak database homology
`Q9C8U0`	Arabidopsis thaliana	Flavin-containing monooxygenase FMO GS-OX-like 5	39.881%	Swiss-Prot	weak database homology
`Q9C8T8`	Arabidopsis thaliana	Putative flavin-containing monooxygenase FMO GS-OX-like 10	44.516%	Swiss-Prot	weak database homology

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