LXL04_026245 | RubberDandelionOmics

Gene overview

LXL04_026245

Reference: OH-1004 Chr: Chr05 Coordinates: 123720333-123722920 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_026245|LXL04_026245|OH1004|cDNA

ATGGGAAAGAAAGGGGGCGGTAGTTCTTGGTTCACAGCCGTCAAGAGAGCCTTTAGTCCAAACAAATCCAAGAACCAAGATCAAGATTTCGATCAAGAAGATGACAGGAAGAGGGAGAAGAGAAGATGGTTGTTTAGAAAATCATCAAATGTCGTACAACAACCGACTCAAATAGTAGTCAAGGATAATAATAACGATGTTCCACAACCTAATCATGACCTCGCGGCAGAGGAGGAAAAGCGTGCGATTTTAATGGCGGC...

CDS

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1572 bp · LXL04_026245|LXL04_026245|OH1004|CDS

ATGGGAAAGAAAGGGGGCGGTAGTTCTTGGTTCACAGCCGTCAAGAGAGCCTTTAGTCCAAACAAATCCAAGAACCAAGATCAAGATTTCGATCAAGAAGATGACAGGAAGAGGGAGAAGAGAAGATGGTTGTTTAGAAAATCATCAAATGTCGTACAACAACCGACTCAAATAGTAGTCAAGGATAATAATAACGATGTTCCACAACCTAATCATGACCTCGCGGCAGAGGAGGAAAAGCGTGCGATTTTAATGGCGGC...

Protein

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523 aa · LXL04_026245|LXL04_026245|OH1004|PROTEIN

MGKKGGGSSWFTAVKRAFSPNKSKNQDQDFDQEDDRKREKRRWLFRKSSNVVQQPTQIVVKDNNNDVPQPNHDLAAEEEKRAILMAAATIKAAEAAATTAHAAAEIIRLTSRPSPVSVKYHFAAILIQTSFRGYLARRALRALKGIVMLQAVIRGQNVRKQATMTLRCMQALLRVQSRLHDQRSRLSHDGGRKSSMAETPTFWDSKHLQDIRQRKSINSRDGSCIQDDSSDRPHTLEELDAILHSRKERDTSLATAFSQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026245`
TK1151 ID	TkA06G018260
OH-1004 ID	LXL04_026245
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026245

Location Chr05:123720333-123722920 (+)

Description Similar to IQD14: Protein IQ-DOMAIN 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01110`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g00820`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g10640`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g03040`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g49380`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026245 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G01110

ath:AT3G49380

ath:AT4G00820

ath:AT4G10640

ath:AT5G03040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411

Rank 1 · LXL04_026245 · OH-1004

Cell membrane0.380

Rank 2 · LXL04_026245 · OH-1004

Nucleus0.379

Rank 3 · LXL04_026245 · OH-1004

Endoplasmic reticulum0.044

Rank 4 · LXL04_026245 · OH-1004

Plastid0.035

Rank 5 · LXL04_026245 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00612.34IQ123-141 aa

PF13178.12DUF4005373-482 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026245	`PF00612.34`	IQ	123	141	3.8e-06	26.9
LXL04_026245	`PF13178.12`	DUF4005	373	482	1.1e-25	90.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9MAM4`	Arabidopsis thaliana	Protein IQ-DOMAIN 18	45.931%	Swiss-Prot	moderate database homology
`F4JHN2`	Arabidopsis thaliana	Protein IQ-DOMAIN 17	43.333%	Swiss-Prot	moderate database homology
`Q7XA83`	Arabidopsis thaliana	Protein IQ-DOMAIN 16	35.766%	Swiss-Prot	moderate database homology
`Q93ZH7`	Arabidopsis thaliana	Protein IQ-DOMAIN 2	28.205%	Swiss-Prot	weak database homology
`Q9SG11`	Arabidopsis thaliana	Protein IQ-DOMAIN 15	41.176%	Swiss-Prot	weak database homology

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