LXL04_026220 | RubberDandelionOmics

Gene overview

LXL04_026220

Reference: OH-1004 Chr: Chr05 Coordinates: 122944549-122945563 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · LXL04_026220|LXL04_026220|OH1004|cDNA

ATGGGAACCTTACCGGTGGTCTACTCGCATCAGTTACTAAGCTCTAATCAAGTCGGTTCTCAGTTTAACAAGCGGAGAAATGCAACTAGTTTGTCAACAGTGTCCGCCGCAGTCCCGATTGAATCAACTTTCATCGGAAGCTGCAAAATCCAACAGAGGCTGAGGAGGTTATCATCGTCCCCTTCAAATCAAAGATCATATACTGGACATATCTGCAAGTCCCAACTTGTTCAAGATTTTGCCCCGGCAGCTTCTGCAGG...

CDS

Download CDS FASTA

567 bp · LXL04_026220|LXL04_026220|OH1004|CDS

ATGGGAACCTTACCGGTGGTCTACTCGCATCAGTTACTAAGCTCTAATCAAGTCGGTTCTCAGTTTAACAAGCGGAGAAATGCAACTAGTTTGTCAACAGTGTCCGCCGCAGTCCCGATTGAATCAACTTTCATCGGAAGCTGCAAAATCCAACAGAGGCTGAGGAGGTTATCATCGTCCCCTTCAAATCAAAGATCATATACTGGACATATCTGCAAGTCCCAACTTGTTCAAGATTTTGCCCCGGCAGCTTCTGCAGG...

Protein

Download Protein FASTA

188 aa · LXL04_026220|LXL04_026220|OH1004|PROTEIN

MGTLPVVYSHQLLSSNQVGSQFNKRRNATSLSTVSAAVPIESTFIGSCKIQQRLRRLSSSPSNQRSYTGHICKSQLVQDFAPAASAGYAILLLGGGLFAYTKSGSKGSLFGGLTGAALMSVAYYLMQSSDTKEIGDALAFGASLLFASVFGIRLAATRKAMPAGLLLGLSVAIMAVTFSAYLQDRTLM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026220`
TK1151 ID	TkA06G020790
OH-1004 ID	LXL04_026220
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026220

Location Chr05:122944549-122945563 (+)

Description Similar to FAX4: Protein FATTY ACID EXPORT 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g33265`	May be involved in free fatty acids export from the plastids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026220 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006783 heme biosynthetic process Biological Process

GO:0006784 heme A biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0015908 fatty acid transport Biological Process

GO:1905885 positive regulation of triglyceride transport Biological Process

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0015245 fatty acid transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G33265

dme:Dmel_CG5532

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975

Rank 1 · LXL04_026220 · OH-1004

Mitochondrion0.026

Rank 2 · LXL04_026220 · OH-1004

Nucleus0.013

Rank 3 · LXL04_026220 · OH-1004

Cytoplasm0.012

Rank 4 · LXL04_026220 · OH-1004

Cell membrane0.006

Rank 5 · LXL04_026220 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03647.19Tmemb_1486-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026220	`PF03647.19`	Tmemb_14	86	176	4.3e-18	66.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPG1`	Arabidopsis thaliana	Protein FATTY ACID EXPORT 4, chloroplastic	52.672%	Swiss-Prot	moderate database homology

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