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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026204
Reference: OH-1004 Chr: Chr05 Coordinates: 122699559-122701568 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1551 bp · LXL04_026204|LXL04_026204|OH1004|cDNA

ATGCGTCAGAAGAAAACCGGCCTTCAGATCGGAGAAGAACGAACCTCTTCCGATTCAAAAACTCCACAAtttcaatttaaaaaaaactcgGATTTCAAAGGCAACTACGTATCAAGGATCCCCCATCTTCAAATCCAAATACCCACGAGAGATTATAATGAACAGCGACCCACTTTCAAGCAAAGCGCAACCACGACAGCAACAGCCACCAACACCCAGAAAACTCTTCTTTCAAATCCTCAGAAACGACCTGTGGTTAT...

CDS

Download CDS FASTA

1551 bp · LXL04_026204|LXL04_026204|OH1004|CDS

ATGCGTCAGAAGAAAACCGGCCTTCAGATCGGAGAAGAACGAACCTCTTCCGATTCAAAAACTCCACAATTTCAATTTAAAAAAAACTCGGATTTCAAAGGCAACTACGTATCAAGGATCCCCCATCTTCAAATCCAAATACCCACGAGAGATTATAATGAACAGCGACCCACTTTCAAGCAAAGCGCAACCACGACAGCAACAGCCACCAACACCCAGAAAACTCTTCTTTCAAATCCTCAGAAACGACCTGTGGTTAT...

Protein

Download Protein FASTA

516 aa · LXL04_026204|LXL04_026204|OH1004|PROTEIN

MRQKKTGLQIGEERTSSDSKTPQFQFKKNSDFKGNYVSRIPHLQIQIPTRDYNEQRPTFKQSATTTATATNTQKTLLSNPQKRPVVMSPQQKSSPHHHHHHHHHHPYTQPRRTSHQKSLICCSSSEALLATKTVALKLLKFTHVKLFWIKVPFRVLLLLFLPSIYYFSLSYRSFYLYVLFLIAFCSVLLSSFNINTFHTTNLPSIRLFVARKFPNLKLYKSDNASTTNTPVVWSIGSKPQFEENTNSGLLVKVYSNGDVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026204
TK1151 IDTkA06G021570
OH-1004 IDLXL04_026204
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 95.984 / OH-1004 46.318
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026204
LocationChr05:122699559-122701568 (-)
DescriptionSimilar to PIP5K1: Phosphatidylinositol 4-phosphate 5-kinase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21980 Catalyzes the synthesis of phosphatidylinositol 4,5- bisphosphate and phosphatidylinositol 3,4-bisphosphate.
AtPIP5K1, an Arabidopsis thaliana phosphatidylinositol phosphate kinase, synthesizes PtdIns(3,4)P(2) and PtdIns(4,5)P(2) in vitro and is inhibited by phosphorylation.2001 · DOI: 10.1042/0264-6021:3590583
At1g60890 Phosphatidylinositol 4-phosphate 5-kinase 8. No verified direct reference in this release
At2g41210 Phosphatidylinositol 4-phosphate 5-kinase 5. No verified direct reference in this release
At1g77740 Possesses phosphatidylinositol (PtdIns) phosphate kinase activity (Probable).
Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase.2009 · DOI: 10.1242/jcs.053488
At3g56960 Phosphatidylinositol 4-phosphate 5-kinase 4. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026204 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009827 plant-type cell wall modification Biological Process
GO:0009846 pollen germination Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0046488 phosphatidylinositol metabolic process Biological Process
GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016324 apical plasma membrane Cellular Component
GO:0090406 pollen tube Cellular Component
GO:0003785 actin monomer binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G21980
ath:AT1G60890
ath:AT2G41210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.269
Rank 1 · LXL04_026204 · OH-1004
Cytoplasm0.185
Rank 2 · LXL04_026204 · OH-1004
Plastid0.177
Rank 3 · LXL04_026204 · OH-1004
Endoplasmic reticulum0.161
Rank 4 · LXL04_026204 · OH-1004
Mitochondrion0.122
Rank 5 · LXL04_026204 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02493.27MORN283-305 aa
PF02493.27MORN306-328 aa
PF02493.27MORN329-350 aa
PF02493.27MORN352-374 aa
PF02493.27MORN375-397 aa
PF02493.27MORN398-418 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026204PF02493.27MORN2833051.4e-37126.0
LXL04_026204PF02493.27MORN3063281.4e-37126.0
LXL04_026204PF02493.27MORN3293501.4e-37126.0
LXL04_026204PF02493.27MORN3523741.4e-37126.0
LXL04_026204PF02493.27MORN3753971.4e-37126.0
LXL04_026204PF02493.27MORN3984181.4e-37126.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q56YP2Arabidopsis thalianaPhosphatidylinositol 4-phosphate 5-kinase 130.522%Swiss-Protweak database homology
Q8RY89Arabidopsis thalianaPhosphatidylinositol 4-phosphate 5-kinase 835.052%Swiss-Protweak database homology
Q9SLG9Arabidopsis thalianaPhosphatidylinositol 4-phosphate 5-kinase 535.632%Swiss-Protweak database homology
Q8L796Arabidopsis thalianaPhosphatidylinositol 4-phosphate 5-kinase 229.200%Swiss-Protweak database homology
Q9M1K2Arabidopsis thalianaPhosphatidylinositol 4-phosphate 5-kinase 432.955%Swiss-Protweak database homology

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