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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_025853
Reference: OH-1004 Chr: Chr05 Coordinates: 117663759-117672721 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3411 bp · LXL04_025853|LXL04_025853|OH1004|cDNA

ATGGAAGTTCACTCTCCTAGTTTGCTCGGACGATGTTCGTCTTTCTTCGAAGCCTTGTCATCATGGGAAGAAAAACAAGATACCCTAATCACCGTAAATGCTTGTCGGCCAGGGTGGGGGGTATTTGACACATTATTTAACGTATTAGTGGAATTAGGGAAATTTGAAGAAGCAAATGAGTGtttttcaagaatgaaatcaCACAAAGTCCTCCCAAAAGCACGTTCTTGTAATTCATTTCTTGGTATATTAACAAAAAT...

CDS

Download CDS FASTA

3411 bp · LXL04_025853|LXL04_025853|OH1004|CDS

ATGGAAGTTCACTCTCCTAGTTTGCTCGGACGATGTTCGTCTTTCTTCGAAGCCTTGTCATCATGGGAAGAAAAACAAGATACCCTAATCACCGTAAATGCTTGTCGGCCAGGGTGGGGGGTATTTGACACATTATTTAACGTATTAGTGGAATTAGGGAAATTTGAAGAAGCAAATGAGTGTTTTTCAAGAATGAAATCACACAAAGTCCTCCCAAAAGCACGTTCTTGTAATTCATTTCTTGGTATATTAACAAAAAT...

Protein

Download Protein FASTA

1136 aa · LXL04_025853|LXL04_025853|OH1004|PROTEIN

MEVHSPSLLGRCSSFFEALSSWEEKQDTLITVNACRPGWGVFDTLFNVLVELGKFEEANECFSRMKSHKVLPKARSCNSFLGILTKIGKGDFSKKFFKDMIIAGIKPSVFTYNIMIDYLCKIGDIDGAQRFYTEMKTLGITPDIVTYNSLIDGYGKNGKLSESICIYNDMKNLHCYPDVITYNALINCFCKFGQMPKAFEFLHFMKKSGLKPNVVTYTTFIDAFCKEGMMQEALKFFMDMRRVGLIPNEFTYTSLIDANC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_025853
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_025853
LocationChr05:117663759-117672721 (-)
DescriptionSimilar to At2g02150: Putative pentatricopeptide repeat-containing protein At2g02150
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g02150 Putative pentatricopeptide repeat-containing protein At2g02150. No verified direct reference in this release
At2g02148 Uncharacterized protein At2g02148. No verified direct reference in this release
At2g01740 Pentatricopeptide repeat-containing protein At2g01740. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release
At5g01110 Pentatricopeptide repeat-containing protein At5g01110. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025853 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0090615 mitochondrial mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0036002 pre-mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G01740
ath:AT2G02148
ath:AT2G02150
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.373
Rank 1 · LXL04_025853 · OH-1004
Cytoplasm0.297
Rank 2 · LXL04_025853 · OH-1004
Mitochondrion0.116
Rank 3 · LXL04_025853 · OH-1004
Plastid0.088
Rank 4 · LXL04_025853 · OH-1004
Cell membrane0.086
Rank 5 · LXL04_025853 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N47-133 aa
PF13041.13PPR_274-121 aa
PF17177.11PPR_long95-220 aa
PF13812.13PPR_397-157 aa
PF12854.14PPR_1104-136 aa
PF13041.13PPR_2107-153 aa
PF01535.27PPR110-140 aa
PF29070.1MSC6_N132-236 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_025853PF29070.1MSC6_N471332.1e-29103.5
LXL04_025853PF13041.13PPR_2741211.1e-166541.6
LXL04_025853PF17177.11PPR_long952206.3e-39134.3
LXL04_025853PF13812.13PPR_3971571.7e-70233.7
LXL04_025853PF12854.14PPR_11041366.7e-123400.8
LXL04_025853PF13041.13PPR_21071531.1e-166541.6
LXL04_025853PF01535.27PPR1101409.6e-113361.6
LXL04_025853PF29070.1MSC6_N1322362.1e-29103.5
LXL04_025853PF13812.13PPR_31331891.7e-70233.7
LXL04_025853PF12854.14PPR_11391706.7e-123400.8
LXL04_025853PF13041.13PPR_21421911.1e-166541.6
LXL04_025853PF01535.27PPR1451749.6e-113361.6
LXL04_025853PF17177.11PPR_long1622636.3e-39134.3
LXL04_025853PF12854.14PPR_11752066.7e-123400.8
LXL04_025853PF13041.13PPR_21772261.1e-166541.6
LXL04_025853PF01535.27PPR1802109.6e-113361.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C894Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At2g0215053.251%Swiss-Protmoderate database homology
Q56XX3Arabidopsis thalianaUncharacterized protein At2g0214856.347%Swiss-Protweak database homology
Q9ZUA2Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g0174036.081%Swiss-Protweak database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial32.836%Swiss-Protweak database homology
Q9LFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0111029.982%Swiss-Protweak database homology

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