Gene Card
Gene overview
cDNA / CDS / Protein Sequences
873 bp · LXL04_025545|LXL04_025545|OH1004|cDNA
ATGGCCGCTGTTGCTTTAATTTCATTCTGCGGAGTGACTCAATCATCATCCGAAAGAAAAATCTCGCGCTCTCTTCTTTCTAATTCCGATGCGCTTAGGGTTCGTACAACCTTCTCATTTCATTCCATAAGCGTTCGCCCTTCGAAATCGAGTTCTCGCTTTGCAGTTCACTGCATGTCTACAGGATCAGAACAACCACCACCAGTCTCCgagacaaaatcaaaatttctCCAAGCTTACAAACGCCCAATACCAAGCAT...
873 bp · LXL04_025545|LXL04_025545|OH1004|CDS
ATGGCCGCTGTTGCTTTAATTTCATTCTGCGGAGTGACTCAATCATCATCCGAAAGAAAAATCTCGCGCTCTCTTCTTTCTAATTCCGATGCGCTTAGGGTTCGTACAACCTTCTCATTTCATTCCATAAGCGTTCGCCCTTCGAAATCGAGTTCTCGCTTTGCAGTTCACTGCATGTCTACAGGATCAGAACAACCACCACCAGTCTCCGAGACAAAATCAAAATTTCTCCAAGCTTACAAACGCCCAATACCAAGCAT...
Protein
Download Protein FASTA290 aa · LXL04_025545|LXL04_025545|OH1004|PROTEIN
MAAVALISFCGVTQSSSERKISRSLLSNSDALRVRTTFSFHSISVRPSKSSSRFAVHCMSTGSEQPPPVSETKSKFLQAYKRPIPSIYNSVLQELIVQQHLMRYKKTYRYDAVFALGFVTVYDQLMEGYPSDEDREAIFQSYINALNEDPQKYRADAAKMETWARTQNSTSLVDFSSKSGEIEDILKDIAERAGGNGNFSYSRFFAVGLFRLLELANATDPTVLEKLCAALKIEKRSVDRDLDVYRNLLSKLVQAKELLK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_025545 |
|---|---|
| TK1151 ID | TkA06G053370 |
| OH-1004 ID | LXL04_025545 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_025545 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:113163219-113164686 (+) | ||||||||||||
| Description | Similar to THF1: Protein THYLAKOID FORMATION1, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0007186 G protein-coupled receptor signaling pathway Biological Process GO:0010027 thylakoid membrane organization Biological Process GO:0010182 sugar mediated signaling pathway Biological Process GO:0010207 photosystem II assembly Biological Process GO:0015996 chlorophyll catabolic process Biological Process GO:0045037 protein import into chloroplast stroma Biological Process GO:0045038 protein import into chloroplast thylakoid membrane Biological Process GO:0050829 defense response to Gram-negative bacterium Biological Process GO:0072597 maintenance of protein location in chloroplast Biological Process GO:1902458 positive regulation of stomatal opening Biological Process GO:1903426 regulation of reactive oxygen species biosynthetic process Biological Process GO:2000070 regulation of response to water deprivation Biological Process | ||||||||||||
| KEGG gene cross-reference | ath:AT2G20890 cyn:Cyan7425_5166 dosa:Os07g0558500 sot:102577610 ter:Tery_1168 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11264.14ThylakoidFormat69-273 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_025545 | PF11264.14 | ThylakoidFormat | 69 | 273 | 1.2e-74 | 251.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.