LXL04_025221 | RubberDandelionOmics

Gene overview

LXL04_025221

Reference: OH-1004 Chr: Chr05 Coordinates: 108112509-108113355 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

591 bp · LXL04_025221|LXL04_025221|OH1004|cDNA

ATGTCGGAAATGGGCGAAATAAAGCTTCTTGGCGCCGCTGCAAGTCCATTTGTGAACAGGGTTCAGTTCGTTCTTAATCTTAAATCTATCAAATACGAGTTCATGGAGGAAGATTTCGATAACAAAAGCGAGCTCCTGTTGACATCGAACCCAGTTTTTAAAAGAGTCCCTGTTCTTATACATTCAAACAAACCGCCGGTTTGCGAATCTCTGATCATAATCGATTACTTAGAAGAAACCCATCCCGATGTCCATAAACT...

CDS

Download CDS FASTA

591 bp · LXL04_025221|LXL04_025221|OH1004|CDS

ATGTCGGAAATGGGCGAAATAAAGCTTCTTGGCGCCGCTGCAAGTCCATTTGTGAACAGGGTTCAGTTCGTTCTTAATCTTAAATCTATCAAATACGAGTTCATGGAGGAAGATTTCGATAACAAAAGCGAGCTCCTGTTGACATCGAACCCAGTTTTTAAAAGAGTCCCTGTTCTTATACATTCAAACAAACCGCCGGTTTGCGAATCTCTGATCATAATCGATTACTTAGAAGAAACCCATCCCGATGTCCATAAACT...

Protein

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196 aa · LXL04_025221|LXL04_025221|OH1004|PROTEIN

MSEMGEIKLLGAAASPFVNRVQFVLNLKSIKYEFMEEDFDNKSELLLTSNPVFKRVPVLIHSNKPPVCESLIIIDYLEETHPDVHKLLPSDPADRAVIRFWAYYIDNEFFPLYGRLRKTPDKEGKEALKKQIIERSQVLEKTFVKFSNGKPYFGGDDVGYLDVVLGCFLGWTKFVGNYNNFKILDEVRQWRNLKLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025221`
TK1151 ID	TkA04G029460
OH-1004 ID	LXL04_025221
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	66.500
Protein coverage (%)	TK1151 97.326 / OH-1004 94.388 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025221

Location Chr05:108112509-108113355 (+)

Description Similar to GSTU17: Glutathione S-transferase U17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10370`	Involved in light signaling, mainly phyA-mediated photomorphogenesis and in the integration of various phytohormone signals to modulate various aspects of plant development by affecting glutathione pools.	A glutathione S-transferase regulated by light and hormones participates in the modulation of Arabidopsis seedling development.2010 · DOI: 10.1104/pp.110.159152
`At1g10360`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At1g59670`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At1g59700`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0530900`	Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025221 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009704 de-etiolation Biological Process

GO:0048527 lateral root development Biological Process

GO:0060416 response to growth hormone Biological Process

GO:0080148 negative regulation of response to water deprivation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004364 glutathione transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10360

ath:AT1G10370

ath:AT1G59670

ath:AT1G59700

dosa:Os10g0530900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.812

Rank 1 · LXL04_025221 · OH-1004

Nucleus0.216

Rank 2 · LXL04_025221 · OH-1004

Peroxisome0.067

Rank 3 · LXL04_025221 · OH-1004

Mitochondrion0.056

Rank 4 · LXL04_025221 · OH-1004

Endoplasmic reticulum0.054

Rank 5 · LXL04_025221 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798.27GST_N7-78 aa

PF13417.13GST_N_39-83 aa

PF13409.13GST_N_214-80 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025221	`PF02798.27`	GST_N	7	78	1.4e-13	51.6
LXL04_025221	`PF13417.13`	GST_N_3	9	83	1.5e-14	54.7
LXL04_025221	`PF13409.13`	GST_N_2	14	80	1.5e-11	45.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FUS8`	Arabidopsis thaliana	Glutathione S-transferase U17	49.730%	Swiss-Prot	moderate database homology
`Q9FUS9`	Arabidopsis thaliana	Glutathione S-transferase U18	48.913%	Swiss-Prot	moderate database homology
`Q9LQ48`	Arabidopsis thaliana	Glutathione S-transferase U15	43.216%	Swiss-Prot	moderate database homology
`Q9XIF8`	Arabidopsis thaliana	Glutathione S-transferase U16	42.632%	Swiss-Prot	moderate database homology
`Q06398`	Oryza sativa subsp. japonica	Probable glutathione S-transferase GSTU6	44.041%	Swiss-Prot	moderate database homology

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