LXL04_024931 | RubberDandelionOmics

Gene overview

LXL04_024931

Reference: OH-1004 Chr: Chr05 Coordinates: 102364106-102365851 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_024931|LXL04_024931|OH1004|cDNA

ATGCCCTCTACGATCTCCCAACCTCAATCACCACTTCACCTAAATCAGATTCAGAATCTGTTGGGATCAGGTGGGTTTGGTTATGTGTATAAGGGGTGTTTGGTTGATGGGACAGAAGTAGCAGTAAAAGAGCTTAAAATTGGAGGAGGGCAAGGGGAACGCGAGTTCAGTGCTGAGGTGGAAATTATCAGCAGAATTCATCATCGTTATTTGGTGTCACTTGTTGGTTATTGTGTATCCGAGAACAAAAGGCTGCTTGT...

CDS

Download CDS FASTA

1041 bp · LXL04_024931|LXL04_024931|OH1004|CDS

ATGCCCTCTACGATCTCCCAACCTCAATCACCACTTCACCTAAATCAGATTCAGAATCTGTTGGGATCAGGTGGGTTTGGTTATGTGTATAAGGGGTGTTTGGTTGATGGGACAGAAGTAGCAGTAAAAGAGCTTAAAATTGGAGGAGGGCAAGGGGAACGCGAGTTCAGTGCTGAGGTGGAAATTATCAGCAGAATTCATCATCGTTATTTGGTGTCACTTGTTGGTTATTGTGTATCCGAGAACAAAAGGCTGCTTGT...

Protein

Download Protein FASTA

346 aa · LXL04_024931|LXL04_024931|OH1004|PROTEIN

MPSTISQPQSPLHLNQIQNLLGSGGFGYVYKGCLVDGTEVAVKELKIGGGQGEREFSAEVEIISRIHHRYLVSLVGYCVSENKRLLVYEYVPNNTLYFHLHGSEVVLDWSTRVKVASGAARGIAYLHEDCHPRIIHRDIKSSNILLDKNFEARVSDFGLAKLAADFSTHVTTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALETEDFKVLVDPKLGTNFIASEMF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024931`
TK1151 ID	TkA06G095180
OH-1004 ID	LXL04_024931
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 45.897 / OH-1004 95.376 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024931

Location Chr05:102364106-102365851 (+)

Description Similar to PERK9: Proline-rich receptor-like protein kinase PERK9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68690`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At1g26150`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At5g38560`	Could be involved in the negative regulation of root growth.	PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana.2015 · DOI: 10.1093/jxb/eru390
`At1g70460`	Negatively regulates root hair elongation.	No verified direct reference in this release
`At1g23540`	Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching.	Over-expression of the IGI1 leading to altered shoot-branching development related to MAX pathway in Arabidopsis.2010 · DOI: 10.1007/s11103-010-9645-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024931 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0007165 signal transduction Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0032502 developmental process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G23540

ath:AT1G26150

ath:AT1G68690

ath:AT1G70460

ath:AT5G38560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.519

Rank 1 · LXL04_024931 · OH-1004

Cytoplasm0.389

Rank 2 · LXL04_024931 · OH-1004

Nucleus0.260

Rank 3 · LXL04_024931 · OH-1004

Golgi apparatus0.043

Rank 4 · LXL04_024931 · OH-1004

Endoplasmic reticulum0.040

Rank 5 · LXL04_024931 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr17-285 aa

PF00069.32Pkinase18-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024931	`PF07714.24`	PK_Tyr_Ser-Thr	17	285	9.6e-47	160.2
LXL04_024931	`PF00069.32`	Pkinase	18	219	5.1e-44	151.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SX31`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK9	80.062%	Swiss-Prot	strong database homology
`Q9C660`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK10	79.503%	Swiss-Prot	strong database homology
`Q9FFW5`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK8	74.455%	Swiss-Prot	strong database homology
`Q9CAL8`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK13	65.046%	Swiss-Prot	strong database homology
`Q9ZUE0`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK12	65.495%	Swiss-Prot	strong database homology

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