LXL04_024600 | RubberDandelionOmics

Gene overview

LXL04_024600

Reference: OH-1004 Chr: Chr05 Coordinates: 94905709-94911436 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · LXL04_024600|LXL04_024600|OH1004|cDNA

ATGCATAAAAAACTGACGGGAACGGTTCCCCTACGATCGCATCGACTCCGTCTTCTCTTCCACTCCTCTCCTCCCAGTTTCTTCAAATTCCCAAATAAAACCACCGTCGCGTTGGTCCTTCTCTCTGTATCGTTCGTTGCAGAAACCCTAGACCCAACCATCACCACAACACCACACCATTTCCACCTCTGTAACCACCTTCTACATCGCCGACTGCCCCACCCACCGCTGCTCACGACCACCATCACCATATACACCGA...

CDS

Download CDS FASTA

1119 bp · LXL04_024600|LXL04_024600|OH1004|CDS

ATGCATAAAAAACTGACGGGAACGGTTCCCCTACGATCGCATCGACTCCGTCTTCTCTTCCACTCCTCTCCTCCCAGTTTCTTCAAATTCCCAAATAAAACCACCGTCGCGTTGGTCCTTCTCTCTGTATCGTTCGTTGCAGAAACCCTAGACCCAACCATCACCACAACACCACACCATTTCCACCTCTGTAACCACCTTCTACATCGCCGACTGCCCCACCCACCGCTGCTCACGACCACCATCACCATATACACCGA...

Protein

Download Protein FASTA

372 aa · LXL04_024600|LXL04_024600|OH1004|PROTEIN

MHKKLTGTVPLRSHRLRLLFHSSPPSFFKFPNKTTVALVLLSVSFVAETLDPTITTTPHHFHLCNHLLHRRLPHPPLLTTTITIYTDAHHHRHLTRRSLRAAHTFSFCHCHMSSEFFLNQIVTMYSVKKLAAKRCWDIAEMRAKSDRQLLKILVNLAMEVGYSEKVDEPCDKYSLEGFMKAKERPTSSMGEQFVATLLMAEQRELTVDVDGFNVSMNEARERSRNAQNKQAVVTVLMGATALHEYVECASVGDDIFDTGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024600`
TK1151 ID	TkA01G496680
OH-1004 ID	LXL04_024600
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 97.561 / OH-1004 27.688 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024600

Location Chr05:94905709-94911436 (+)

Description Similar to ALATS: Alanine--tRNA ligase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50200`	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024600 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006419 alanyl-tRNA aminoacylation Biological Process

GO:0070143 mitochondrial alanyl-tRNA aminoacylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000049 tRNA binding Molecular Function

GO:0002161 aminoacyl-tRNA deacylase activity Molecular Function

GO:0004813 alanine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G50200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.444

Rank 1 · LXL04_024600 · OH-1004

Cytoplasm0.356

Rank 2 · LXL04_024600 · OH-1004

Cell membrane0.176

Rank 3 · LXL04_024600 · OH-1004

Endoplasmic reticulum0.099

Rank 4 · LXL04_024600 · OH-1004

Mitochondrion0.073

Rank 5 · LXL04_024600 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P36428`	Arabidopsis thaliana	Alanine--tRNA ligase	35.556%	Swiss-Prot	weak database homology

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