LXL04_024282 | RubberDandelionOmics

Gene overview

LXL04_024282

Reference: OH-1004 Chr: Chr05 Coordinates: 86346646-86349345 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

795 bp · LXL04_024282|LXL04_024282|OH1004|cDNA

ATGAGATTCAGCCACCACCCGGTACCTTCTCCGTCCACTACCGCAGCTTCATCAGTGAAAATGAATTTCAACAATGGAGATCATAAAGCTTCCTTTTTCAAGATATTACTAAACGACTCAGTAGACTACCTTCCATTGCCGACTACTTTTGCCAAAGAGTTTTTGGAAAAGGGAAACAACAGAAAACAGACACTTGTTCTGAAACCCAAATCGGGTGTCAAATGGAGGGTCAAATACTTAAAGAACGAAGATCGATACTA...

CDS

Download CDS FASTA

795 bp · LXL04_024282|LXL04_024282|OH1004|CDS

ATGAGATTCAGCCACCACCCGGTACCTTCTCCGTCCACTACCGCAGCTTCATCAGTGAAAATGAATTTCAACAATGGAGATCATAAAGCTTCCTTTTTCAAGATATTACTAAACGACTCAGTAGACTACCTTCCATTGCCGACTACTTTTGCCAAAGAGTTTTTGGAAAAGGGAAACAACAGAAAACAGACACTTGTTCTGAAACCCAAATCGGGTGTCAAATGGAGGGTCAAATACTTAAAGAACGAAGATCGATACTA...

Protein

Download Protein FASTA

264 aa · LXL04_024282|LXL04_024282|OH1004|PROTEIN

MRFSHHPVPSPSTTAASSVKMNFNNGDHKASFFKILLNDSVDYLPLPTTFAKEFLEKGNNRKQTLVLKPKSGVKWRVKYLKNEDRYYFMDGWLNFIKDNRLQVGDFLVFWLLSASPKSTFQVFCYAPNGCLKHPVGFSAVGKKRCVKDETPDNDDDDNSSQKVHKSITRVLRKSYVHQLPMATGFLKETGLDRYDNVRLRTNEGKIWKVGVSKYGKIRLPNLTRGWNDFWKGNEMNMGNTFQITHVKGNLIHVHVIKSQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024282`
TK1151 ID	TkA06G157290
OH-1004 ID	LXL04_024282
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024282

Location Chr05:86346646-86349345 (-)

Description Similar to Os11g0197600: B3 domain-containing protein Os11g0197600

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24690`	B3 domain-containing protein REM-like 1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0197600`	B3 domain-containing protein Os11g0197600.	No verified direct reference in this release
`Os01g0905400`	B3 domain-containing protein Os01g0905400.	No verified direct reference in this release
`Os03g0621600`	Putative B3 domain-containing protein Os03g0621600.	No verified direct reference in this release
`Os12g0592300`	B3 domain-containing protein Os12g0592300.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_024282 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G24690

dosa:Os01g0905400

dosa:Os03g0621600

dosa:Os11g0197600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967

Rank 1 · LXL04_024282 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_024282 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_024282 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_024282 · OH-1004

Mitochondrion0.008

Rank 5 · LXL04_024282 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362.27B332-116 aa

PF02362.27B3182-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024282	`PF02362.27`	B3	32	116	7.8e-25	87.5
LXL04_024282	`PF02362.27`	B3	182	255	7.8e-25	87.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S8E8`	Arabidopsis thaliana	B3 domain-containing protein REM-like 1	25.101%	Swiss-Prot	weak database homology
`Q2R9D2`	Oryza sativa subsp. japonica	B3 domain-containing protein Os11g0197600	31.000%	Swiss-Prot	weak database homology
`Q5N6V0`	Oryza sativa subsp. japonica	B3 domain-containing protein Os01g0905400	32.673%	Swiss-Prot	weak database homology
`Q851V5`	Oryza sativa subsp. japonica	Putative B3 domain-containing protein Os03g0621600	33.019%	Swiss-Prot	weak database homology
`Q2QMT2`	Oryza sativa subsp. japonica	B3 domain-containing protein Os12g0592300	30.216%	Swiss-Prot	weak database homology

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