Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1503 bp · LXL04_023932|LXL04_023932|OH1004|cDNA
ATGGAGAGCTCTACATCTCGAACGATCTTCCAAGACATCAGCTCCAGAGAGCTCAATGGTTTCAGAGTACGAAAACGGCCGTGTTTCGCTGACGATTCTTCCAAGTTTAGTGAAATCGGAGCTTTTGAATTTGTACACGACAACAGTGCTACTCCTCCAATGGCTTTATCATTCTGCAAGACAAACAGAAACGCTCACATTGTTGCTGTTACTGGTGAAGACGGATATGTTAGCTTATACAATACTCGCTTGAAACTTCC...
1503 bp · LXL04_023932|LXL04_023932|OH1004|CDS
ATGGAGAGCTCTACATCTCGAACGATCTTCCAAGACATCAGCTCCAGAGAGCTCAATGGTTTCAGAGTACGAAAACGGCCGTGTTTCGCTGACGATTCTTCCAAGTTTAGTGAAATCGGAGCTTTTGAATTTGTACACGACAACAGTGCTACTCCTCCAATGGCTTTATCATTCTGCAAGACAAACAGAAACGCTCACATTGTTGCTGTTACTGGTGAAGACGGATATGTTAGCTTATACAATACTCGCTTGAAACTTCC...
Protein
Download Protein FASTA500 aa · LXL04_023932|LXL04_023932|OH1004|PROTEIN
MESSTSRTIFQDISSRELNGFRVRKRPCFADDSSKFSEIGAFEFVHDNSATPPMALSFCKTNRNAHIVAVTGEDGYVSLYNTRLKLPFSATHESNADKARVSEWLAHDNAIFDVCWIKDDTHLLTACGDHSVKLWDTQEQKCIGALIGHTGSVKSISAHPVNNDIIVSGSRDGSFALWDLRNSKRRRSHFSTSPIDIVRGANSLNLKTRGRHGKGAAISITSVLYLKDEVTIATAGAADSIIKFWDTRNLKASITQTIAQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023932 |
|---|---|
| TK1151 ID | TkA01G467150 |
| OH-1004 ID | LXL04_023932 |
| Relationship / confidence | Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable |
| Protein identity (%) | 97.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023932 |
|---|---|
| Location | Chr05:74746284-74749167 (+) |
| Description | Similar to dtl-a: Denticleless protein homolog A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006513 protein monoubiquitination Biological Process GO:0006974 DNA damage response Biological Process GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process GO:0009411 response to UV Biological Process GO:0009896 positive regulation of catabolic process Biological Process GO:0010971 positive regulation of G2/M transition of mitotic cell cycle Biological Process GO:0019985 translesion synthesis Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0045732 positive regulation of protein catabolic process Biological Process GO:0048511 rhythmic process Biological Process |
| KEGG gene cross-reference | gga:421373 mmu:76843 xla:444035 xtr:395039 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24782.3WD40_MABP1-WDR62_2nd42-180 aaPF24814.2WD40_Prp1951-185 aaPF23409.2Beta-prop_EML54-258 aaPF25175.2Beta-prop_WDR555-186 aaPF25391.2WD40_Gbeta59-189 aaPF24105.2Beta-prop_CAF1B_HIR160-185 aaPF29037.1DSE1_N61-207 aaPF23775.2Beta-prop_RIG_2nd62-170 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023932 | PF24782.3 | WD40_MABP1-WDR62_2nd | 42 | 180 | 1.3e-11 | 44.8 |
| LXL04_023932 | PF24814.2 | WD40_Prp19 | 51 | 185 | 2.9e-28 | 99.5 |
| LXL04_023932 | PF23409.2 | Beta-prop_EML | 54 | 258 | 2e-12 | 47.9 |
| LXL04_023932 | PF25175.2 | Beta-prop_WDR5 | 55 | 186 | 8e-34 | 118.0 |
| LXL04_023932 | PF25391.2 | WD40_Gbeta | 59 | 189 | 1.1e-19 | 71.4 |
| LXL04_023932 | PF24105.2 | Beta-prop_CAF1B_HIR1 | 60 | 185 | 2.7e-16 | 60.3 |
| LXL04_023932 | PF29037.1 | DSE1_N | 61 | 207 | 2.1e-17 | 64.0 |
| LXL04_023932 | PF23775.2 | Beta-prop_RIG_2nd | 62 | 170 | 1.3e-10 | 41.9 |
| LXL04_023932 | PF24796.2 | WDR55 | 66 | 185 | 5.4e-15 | 55.9 |
| LXL04_023932 | PF25174.2 | Beta-prop_THOC3 | 96 | 144 | 6.1e-27 | 95.0 |
| LXL04_023932 | PF24807.2 | WD40_CDC20-Fz | 97 | 186 | 9.5e-26 | 91.5 |
| LXL04_023932 | PF23761.2 | Beta-prop_DCAF4 | 97 | 190 | 3.5e-09 | 36.7 |
| LXL04_023932 | PF00400.39 | WD40 | 104 | 136 | 2e-27 | 95.1 |
| LXL04_023932 | PF25172.2 | Beta-prop_WDR3_2nd | 105 | 179 | 6.1e-17 | 62.5 |
| LXL04_023932 | PF25173.2 | Beta-prop_WDR3_1st | 106 | 180 | 7.2e-29 | 101.5 |
| LXL04_023932 | PF25047.1 | Beta-prop_TEP1_2nd | 106 | 211 | 8.2e-16 | 58.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.