Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1146 bp · LXL04_022506|LXL04_022506|OH1004|cDNA
ATGCAGTCTGCAGCCGTCGCTCACCGCCACTTCCTCGATGGCGGCGCCACCGCCGCCTTCCCCTTTTCCCATCTCAAATCCACTCCTACCGCCAGCCCATTCTCAGTTCGTATGTCACTACGTGAGGACGCCCCATCTCTCGCTGTTGTCGGCGTCACTGGTGCCGTCGGTCAGGAGTTTCTATCCGTCCTCTCCGACCGATCCTTCCCCTACCGATCTATAAAAATGCTTGCTAGCAAACGCTCCGCCGGAAAGAAATA...
1146 bp · LXL04_022506|LXL04_022506|OH1004|CDS
ATGCAGTCTGCAGCCGTCGCTCACCGCCACTTCCTCGATGGCGGCGCCACCGCCGCCTTCCCCTTTTCCCATCTCAAATCCACTCCTACCGCCAGCCCATTCTCAGTTCGTATGTCACTACGTGAGGACGCCCCATCTCTCGCTGTTGTCGGCGTCACTGGTGCCGTCGGTCAGGAGTTTCTATCCGTCCTCTCCGACCGATCCTTCCCCTACCGATCTATAAAAATGCTTGCTAGCAAACGCTCCGCCGGAAAGAAATA...
Protein
Download Protein FASTA381 aa · LXL04_022506|LXL04_022506|OH1004|PROTEIN
MQSAAVAHRHFLDGGATAAFPFSHLKSTPTASPFSVRMSLREDAPSLAVVGVTGAVGQEFLSVLSDRSFPYRSIKMLASKRSAGKKYTFEDNEYVVEELTADSFKDVDIALFSAGGSISKEFGPIAAKCGSVVVDNSSAFRMDDGVPLVIPEVNPDAMSHIKLGSGKGAIIANPNCSTIICLMAATPLHRRAKVLRMVVSTYQAASGAGAAAMEELELQTREVLEGKRPTCKIFKQQYAFNLFSHNAPVLPNGYNEEEMK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022506 |
|---|---|
| TK1151 ID | TkA05G472780 |
| OH-1004 ID | LXL04_022506 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022506 |
|---|---|
| Location | Chr04:151775289-151776937 (+) |
| Description | Similar to asd: Aspartate-semialdehyde dehydrogenase (Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006526 L-arginine biosynthetic process Biological Process GO:0009088 L-threonine biosynthetic process Biological Process GO:0009089 L-lysine biosynthetic process via diaminopimelate Biological Process GO:0009097 isoleucine biosynthetic process Biological Process GO:0019877 diaminopimelate biosynthetic process Biological Process GO:0071266 'de novo' L-methionine biosynthetic process Biological Process GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity Molecular Function GO:0004073 aspartate-semialdehyde dehydrogenase activity Molecular Function GO:0046983 protein dimerization activity Molecular Function GO:0050661 NADP binding Molecular Function GO:0051287 NAD binding Molecular Function |
| KEGG gene cross-reference | aae:aq_1866 pma:Pro_1814 syn:slr0549 vch:VC_2107 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01118.31Semialdhyde_dh47-159 aaPF02774.24Semialdhyde_dhC187-367 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022506 | PF01118.31 | Semialdhyde_dh | 47 | 159 | 2.5e-34 | 119.0 |
| LXL04_022506 | PF02774.24 | Semialdhyde_dhC | 187 | 367 | 1.1e-44 | 153.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.