LXL04_022327 | RubberDandelionOmics

Gene overview

LXL04_022327

Reference: OH-1004 Chr: Chr04 Coordinates: 148136626-148147257 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5208 bp · LXL04_022327|LXL04_022327|OH1004|cDNA

GAAGCAAACGAAGAGCATTTCAAAACCAAATCTCGCATAAACCTCGCCCAGAAGATTAATTGTAGATCGAGAGAGATCGCAATGAGGAAGTGGACTCTTCCGTCCGTATTGTTTCTGCTATGTCTCCTCTGTCTTCTTCCAGATCAAGGTCGCAAATTACATGCGAACGCAGAGGCTGATTCAGATGATTTAGTGAATCCACCCAAGATTGAAGACAAGCTTGGTGCCGTTCCACATGGTTTGTCTACGGATTCAGACGT...

CDS

Download CDS FASTA

5127 bp · LXL04_022327|LXL04_022327|OH1004|CDS

ATGAGGAAGTGGACTCTTCCGTCCGTATTGTTTCTGCTATGTCTCCTCTGTCTTCTTCCAGATCAAGGTCGCAAATTACATGCGAACGCAGAGGCTGATTCAGATGATTTAGTGAATCCACCCAAGATTGAAGACAAGCTTGGTGCCGTTCCACATGGTTTGTCTACGGATTCAGACGTTGCCAAGAGGGAAGCGGAGTCAATGTCCAGGAAAAACCTCCGCAGCAATGCTGAGAAGTTTGAGTTCCAAGCTGAAGTATC...

Protein

Download Protein FASTA

1708 aa · LXL04_022327|LXL04_022327|OH1004|PROTEIN

MRKWTLPSVLFLLCLLCLLPDQGRKLHANAEADSDDLVNPPKIEDKLGAVPHGLSTDSDVAKREAESMSRKNLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDDTKLEIQIKLDKENKILSIRDRGVGMTKDDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTYNEPLGRGTEIRIHLKDEAGEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022327`
TK1151 ID	TkA05G458560
OH-1004 ID	LXL04_022327
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 99.388 / OH-1004 47.717 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022327

Location Chr04:148136626-148147257 (+)

Description Similar to HSP90-7: Endoplasmin homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24190`	May have a molecular chaperone role in the processing of secreted materials.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022327 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006457 protein folding Biological Process

GO:0009306 protein secretion Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0030070 insulin processing Biological Process

GO:0030177 positive regulation of Wnt signaling pathway Biological Process

GO:0030970 retrograde protein transport, ER to cytosol Biological Process

GO:0031247 actin rod assembly Biological Process

GO:0034123 positive regulation of toll-like receptor signaling pathway Biological Process

KEGG gene cross-reference

ath:AT4G24190

mmu:22027

rno:362862

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.600

Rank 1 · LXL04_022327 · OH-1004

Cytoplasm0.237

Rank 2 · LXL04_022327 · OH-1004

Endoplasmic reticulum0.086

Rank 3 · LXL04_022327 · OH-1004

Mitochondrion0.075

Rank 4 · LXL04_022327 · OH-1004

Cell membrane0.059

Rank 5 · LXL04_022327 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02518.32HATPase_c104-255 aa

PF13589.13HATPase_c_3106-220 aa

PF00183.24HSP90259-798 aa

PF27041.1ZBED1_RNase-like1288-1338 aa

PF27039.1ZBED1_RNase-like_helical1336-1448 aa

PF14372.13hAT-like_RNase-H1471-1513 aa

PF05699.20Dimer_Tnp_hAT1552-1628 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022327	`PF02518.32`	HATPase_c	104	255	5.3e-07	30.8
LXL04_022327	`PF13589.13`	HATPase_c_3	106	220	1.6e-07	32.2
LXL04_022327	`PF00183.24`	HSP90	259	798	1.2e-214	714.8
LXL04_022327	`PF27041.1`	ZBED1_RNase-like	1288	1338	2.5e-14	53.9
LXL04_022327	`PF27039.1`	ZBED1_RNase-like_helical	1336	1448	2.4e-28	99.1
LXL04_022327	`PF14372.13`	hAT-like_RNase-H	1471	1513	5.1e-06	27.4
LXL04_022327	`PF05699.20`	Dimer_Tnp_hAT	1552	1628	6.3e-26	90.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9STX5`	Arabidopsis thaliana	Endoplasmin homolog	83.269%	Swiss-Prot	weak database homology

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