LXL04_021983 | RubberDandelionOmics

Gene overview

LXL04_021983

Reference: OH-1004 Chr: Chr04 Coordinates: 141838705-141839389 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

324 bp · LXL04_021983|LXL04_021983|OH1004|cDNA

TTGTTTGCTCAATTGAAGGATCTTAAAGCTGAGCTCGCTCTTCTCCGTGTCGCTAAAGTCACCGGCGGTGCTCCCAACAAGCTCTCCAAAATTGAAGTTGTGAGGACATCAATTGCACAGGTGTTGACTGTTATTTCACAGACACAGAAAGCCAAGCTCAGGGAAGCTTACAAGAACAAGAAGTACTTACCTCTTGATTTGCGTCCCAAGAAGACCAGAGCCATTCGCAGGCGTTTAACTAAGCACCAGGTATCTTTGAA...

CDS

Download CDS FASTA

324 bp · LXL04_021983|LXL04_021983|OH1004|CDS

TTGTTTGCTCAATTGAAGGATCTTAAAGCTGAGCTCGCTCTTCTCCGTGTCGCTAAAGTCACCGGCGGTGCTCCCAACAAGCTCTCCAAAATTGAAGTTGTGAGGACATCAATTGCACAGGTGTTGACTGTTATTTCACAGACACAGAAAGCCAAGCTCAGGGAAGCTTACAAGAACAAGAAGTACTTACCTCTTGATTTGCGTCCCAAGAAGACCAGAGCCATTCGCAGGCGTTTAACTAAGCACCAGGTATCTTTGAA...

Protein

Download Protein FASTA

107 aa · LXL04_021983|LXL04_021983|OH1004|PROTEIN

MFAQLKDLKAELALLRVAKVTGGAPNKLSKIEVVRTSIAQVLTVISQTQKAKLREAYKNKKYLPLDLRPKKTRAIRRRLTKHQVSLKTEREKKKEKYFPLRKYAIKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021983`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021983

Location Chr04:141838705-141839389 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39390`	Large ribosomal subunit protein uL29y.	No verified direct reference in this release
`At5g02610`	Large ribosomal subunit protein uL29w.	No verified direct reference in this release
`At3g09500`	Large ribosomal subunit protein uL29z.	No verified direct reference in this release
`At3g55170`	Large ribosomal subunit protein uL29x.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021983 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0006412 translation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G39390

ath:AT3G09500

ath:AT3G55170

ath:AT5G02610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.887

Rank 1 · LXL04_021983 · OH-1004

Nucleus0.194

Rank 2 · LXL04_021983 · OH-1004

Endoplasmic reticulum0.073

Rank 3 · LXL04_021983 · OH-1004

Mitochondrion0.024

Rank 4 · LXL04_021983 · OH-1004

Plastid0.012

Rank 5 · LXL04_021983 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00831.29Ribosomal_L293-47 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021983	`PF00831.29`	Ribosomal_L29	3	47	1.6e-11	44.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80626`	Arabidopsis thaliana	Large ribosomal subunit protein uL29y	86.916%	Swiss-Prot	strong database homology
`Q9LZ41`	Arabidopsis thaliana	Large ribosomal subunit protein uL29w	89.423%	Swiss-Prot	strong database homology
`Q9SF53`	Arabidopsis thaliana	Large ribosomal subunit protein uL29z	89.423%	Swiss-Prot	strong database homology
`Q9M3D2`	Arabidopsis thaliana	Large ribosomal subunit protein uL29x	85.047%	Swiss-Prot	strong database homology

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