LXL04_020745 | RubberDandelionOmics

Gene overview

LXL04_020745

Reference: OH-1004 Chr: Chr04 Coordinates: 107455799-107460545 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2175 bp · LXL04_020745|LXL04_020745|OH1004|cDNA

ATGACTTTGATTCTTAATAATCATCATCATCCTAGCTTCATTTACTCCAATATTCATTCGAAAAAGTTCAATTTCACCACCAAATTAGGGGTAAAGTACTCTTGTCGTAGAGCTAACAGAAGACTTGTTTTTACGCCGGTGAATTCGGCATCCGTTAACGGATATTCAGTGCGGAATCATGATGATAGTCCACAAGTTTCAGATGGAGTGGGCACGGGTGACGGAGAAGATAATGTGGTTGGGCTGTCTGAGAGGTTGTT...

CDS

Download CDS FASTA

2175 bp · LXL04_020745|LXL04_020745|OH1004|CDS

ATGACTTTGATTCTTAATAATCATCATCATCCTAGCTTCATTTACTCCAATATTCATTCGAAAAAGTTCAATTTCACCACCAAATTAGGGGTAAAGTACTCTTGTCGTAGAGCTAACAGAAGACTTGTTTTTACGCCGGTGAATTCGGCATCCGTTAACGGATATTCAGTGCGGAATCATGATGATAGTCCACAAGTTTCAGATGGAGTGGGCACGGGTGACGGAGAAGATAATGTGGTTGGGCTGTCTGAGAGGTTGTT...

Protein

Download Protein FASTA

724 aa · LXL04_020745|LXL04_020745|OH1004|PROTEIN

MTLILNNHHHPSFIYSNIHSKKFNFTTKLGVKYSCRRANRRLVFTPVNSASVNGYSVRNHDDSPQVSDGVGTGDGEDNVVGLSERLLRFVRLVSSVLPGGNWWRFPEEVEISETAKPVTLVRALRRMWGLISHDRWVIFAAFSALILTALTEISIPHFLTASIFSAQSGNTAVFQGNVKLLIFLCITSGICSGLRGCWFGIANMILVKRMRETLYSVLLLQDINFFDSESIGDLTSRLGSDCQQVSRVIGNDLNLILRNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020745`
TK1151 ID	TkA05G300940
OH-1004 ID	LXL04_020745
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.200
Protein coverage (%)	TK1151 99.593 / OH-1004 71.409 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020745

Location Chr04:107455799-107460545 (+)

Description Similar to ABCB26: ABC transporter B family member 26, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70610`	ABC transporter B family member 26, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0755100`	Metal transporter involved in the sequestration of aluminum into vacuoles, which is required for cellular detoxification of aluminum.	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04837.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020745 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006518 peptide metabolic process Biological Process

GO:0010044 response to aluminum ion Biological Process

GO:0015031 protein transport Biological Process

GO:0015833 peptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0140982 detoxification of aluminum ion Biological Process

GO:1902602 aluminum ion transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005764 lysosome Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G70610

dosa:Os03g0755100

hsa:23457

mmu:56325

rno:63886

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.897

Rank 1 · LXL04_020745 · OH-1004

Mitochondrion0.085

Rank 2 · LXL04_020745 · OH-1004

Peroxisome0.038

Rank 3 · LXL04_020745 · OH-1004

Cytoplasm0.025

Rank 4 · LXL04_020745 · OH-1004

Cell membrane0.021

Rank 5 · LXL04_020745 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664.29ABC_membrane139-405 aa

PF00005.34ABC_tran500-648 aa

PF02463.26SMC_N538-692 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020745	`PF00664.29`	ABC_membrane	139	405	1.3e-37	130.7
LXL04_020745	`PF00005.34`	ABC_tran	500	648	3.1e-35	122.5
LXL04_020745	`PF02463.26`	SMC_N	538	692	8.4e-08	32.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RY46`	Arabidopsis thaliana	ABC transporter B family member 26, chloroplastic	65.833%	Swiss-Prot	strong database homology
`Q9FNU2`	Oryza sativa subsp. japonica	ABC transporter B family member 25	34.918%	Swiss-Prot	moderate database homology

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