Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2211 bp · LXL04_020540|LXL04_020540|OH1004|cDNA
ATGTATAACAACCGTAAGTATTTAATAAAATGTGTACATATACACTTATCAGATTTAAAATATTGTAATATAACTAACACAAACTATTTTTCAATAACAGGTAATAGACGTAGACAAAGTCTACGACAAGCAAAGTTTGCTTTGAGAAGATTTGCAAATACTTCTTCAAATCCAGTTCAAGTTGCAAACTCAGATGATGAGAATCAAAACAACGTAGATAATCAGAACATCATGATCGATCCTCCTATCAACGTGATCCA...
2211 bp · LXL04_020540|LXL04_020540|OH1004|CDS
ATGTATAACAACCGTAAGTATTTAATAAAATGTGTACATATACACTTATCAGATTTAAAATATTGTAATATAACTAACACAAACTATTTTTCAATAACAGGTAATAGACGTAGACAAAGTCTACGACAAGCAAAGTTTGCTTTGAGAAGATTTGCAAATACTTCTTCAAATCCAGTTCAAGTTGCAAACTCAGATGATGAGAATCAAAACAACGTAGATAATCAGAACATCATGATCGATCCTCCTATCAACGTGATCCA...
Protein
Download Protein FASTA736 aa · LXL04_020540|LXL04_020540|OH1004|PROTEIN
MYNNRKYLIKCVHIHLSDLKYCNITNTNYFSITGNRRRQSLRQAKFALRRFANTSSNPVQVANSDDENQNNVDNQNIMIDPPINVIHREINNENNPEVNNENNPEINNENNPEINNENIDEDLNMNIDANEEVDTEDEIDENQLNIVVQNIQATSRNQNAEDDDESLAQKEARTRNLLQISEKDTNAKSSTPKKIGWTKGKVRQLIQSTTTVKEVGTSTSGRKRKREYKGEKRTSTRKNTNPYASITPFKHFRTKEMTKR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020540 |
|---|---|
| TK1151 ID | TkA05G246280 |
| OH-1004 ID | LXL04_020540 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 94.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 55.435Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020540 |
|---|---|
| Location | Chr04:89042866-89046468 (+) |
| Description | Similar to hmu: Halomucin (Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0007156 homophilic cell-cell adhesion Biological Process GO:0019079 viral genome replication Biological Process GO:0019082 viral protein processing Biological Process GO:0032259 methylation Biological Process GO:0039502 symbiont-mediated suppression of host type I interferon-mediated signaling pathway Biological Process GO:0039520 symbiont-mediated activation of host autophagy Biological Process GO:0039548 symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity Biological Process GO:0039579 symbiont-mediated suppression of host ISG15-protein conjugation Biological Process GO:0039595 symbiont-mediated degradation of host mRNA Biological Process GO:0039648 symbiont-mediated perturbation of host ubiquitin-like protein modification Biological Process GO:0039657 symbiont-mediated suppression of host gene expression Biological Process |
| KEGG gene cross-reference | hwa:HQ_1081A These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29561.1DUF8566323-458 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020540 | PF29561.1 | DUF8566 | 323 | 458 | 1.4e-30 | 107.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.