LXL04_019509 | RubberDandelionOmics

Gene overview

LXL04_019509

Reference: OH-1004 Chr: Chr04 Coordinates: 32762494-32766838 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1545 bp · LXL04_019509|LXL04_019509|OH1004|cDNA

ATGGAAAATGGAGCAAGAAAACTGAGCGATGAATATGAAGTCACAACAATCTTGGGAAGAGGCGGGTTTTCGATTGTACGAAAAGGTATAAAGAAGTCAAAGGGCGAGTGTCCAGATGGTCAACAAGAAGTGGCAATCAAGACACTGAAAAGAGTCGGTGGTGGCGGCAGCGGCAGTAATGGGGTGGCCGGGTTTCCAAGCCGTAAGCAGGTTTTGATCTCGGACGCTTTGCTAGCAAACGAGATCATGGTAATGAAAAG...

CDS

Download CDS FASTA

1545 bp · LXL04_019509|LXL04_019509|OH1004|CDS

ATGGAAAATGGAGCAAGAAAACTGAGCGATGAATATGAAGTCACAACAATCTTGGGAAGAGGCGGGTTTTCGATTGTACGAAAAGGTATAAAGAAGTCAAAGGGCGAGTGTCCAGATGGTCAACAAGAAGTGGCAATCAAGACACTGAAAAGAGTCGGTGGTGGCGGCAGCGGCAGTAATGGGGTGGCCGGGTTTCCAAGCCGTAAGCAGGTTTTGATCTCGGACGCTTTGCTAGCAAACGAGATCATGGTAATGAAAAG...

Protein

Download Protein FASTA

514 aa · LXL04_019509|LXL04_019509|OH1004|PROTEIN

MENGARKLSDEYEVTTILGRGGFSIVRKGIKKSKGECPDGQQEVAIKTLKRVGGGGSGSNGVAGFPSRKQVLISDALLANEIMVMKRVVDEVSPHCNVIQLHDVCEDPTGVHLVLELCSGGELFDRIVTQERYSEAEAAKVVQQIASGLAALHKANVIHRDLKPENCLFLDKSKESPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALAQRKITSKSDMWALGVILYILLSGYPPFSAQSHLQKQQMIMNGNFSFYDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019509`
TK1151 ID	TkAUNG072250
OH-1004 ID	LXL04_019509
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019509

Location Chr04:32762494-32766838 (+)

Description Similar to CCAMK: Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0489900`	Calcium- and calmodulin-dependent protein kinase required for arbuscular mycorrhizal (AM) symbiosis.	A rice calcium- and calmodulin-dependent protein kinase restores nodulation to a legume mutant.2006 · DOI: 10.1094/mpmi-19-0495 Fungal symbiosis in rice requires an ortholog of a legume common symbiosis gene encoding a Ca2+/calmodulin-dependent protein kinase.2007 · DOI: 10.1104/pp.107.109876 Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.2008 · DOI: 10.1093/pcp/pcn153 OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice.2012 · DOI: 10.1093/mp/sss068 OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice.2014 · DOI: 10.1111/pce.12154

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019509 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009608 response to symbiont Biological Process

GO:0009877 nodulation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009931 calcium-dependent protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

dosa:Os05g0489900

mtr:11405240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.521

Rank 1 · LXL04_019509 · OH-1004

Nucleus0.316

Rank 2 · LXL04_019509 · OH-1004

Cell membrane0.233

Rank 3 · LXL04_019509 · OH-1004

Golgi apparatus0.082

Rank 4 · LXL04_019509 · OH-1004

Endoplasmic reticulum0.063

Rank 5 · LXL04_019509 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase12-296 aa

PF07714.24PK_Tyr_Ser-Thr14-292 aa

PF13499.13EF-hand_7428-498 aa

PF13405.13EF-hand_6431-458 aa

PF00036.39EF-hand_1432-458 aa

PF13833.13EF-hand_8468-499 aa

PF00036.39EF-hand_1472-499 aa

PF13405.13EF-hand_6473-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019509	`PF00069.32`	Pkinase	12	296	9.8e-65	219.3
LXL04_019509	`PF07714.24`	PK_Tyr_Ser-Thr	14	292	7.4e-35	121.2
LXL04_019509	`PF13499.13`	EF-hand_7	428	498	1e-17	64.9
LXL04_019509	`PF13405.13`	EF-hand_6	431	458	4.1e-20	70.2
LXL04_019509	`PF00036.39`	EF-hand_1	432	458	2.1e-19	68.2
LXL04_019509	`PF13833.13`	EF-hand_8	468	499	1.1e-06	29.0
LXL04_019509	`PF00036.39`	EF-hand_1	472	499	2.1e-19	68.2
LXL04_019509	`PF13405.13`	EF-hand_6	473	498	4.1e-20	70.2
LXL04_019509	`PF13202.13`	EF-hand_5	473	495	1e-13	50.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6AVM3`	Oryza sativa subsp. japonica	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase	69.650%	Swiss-Prot	strong database homology

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