LXL04_019174 | RubberDandelionOmics

Gene overview

LXL04_019174

Reference: OH-1004 Chr: Chr04 Coordinates: 25407844-25412127 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3141 bp · LXL04_019174|LXL04_019174|OH1004|cDNA

atgatgCATCCAGAAGTCCTTCAATCATATTTTCAAGAAGACCTTGATCAATCTCAAATCTATGGTCTAAAATACGCATGTGAAGACCATGACTTCTACTCCTCAATCACAACCCCTGAGGACTCCTCCGTGATCACCTCAGACTCACACTTTCATGCCATATCACCATGTAATTTTGGTGTGTTACCTGATTTAGCTGATGAGATGCAAGTAGTATTTCCTATCGAGAATATTGCGCAACATATGGAAGGGATTGAAGG...

CDS

Download CDS FASTA

3141 bp · LXL04_019174|LXL04_019174|OH1004|CDS

ATGATGCATCCAGAAGTCCTTCAATCATATTTTCAAGAAGACCTTGATCAATCTCAAATCTATGGTCTAAAATACGCATGTGAAGACCATGACTTCTACTCCTCAATCACAACCCCTGAGGACTCCTCCGTGATCACCTCAGACTCACACTTTCATGCCATATCACCATGTAATTTTGGTGTGTTACCTGATTTAGCTGATGAGATGCAAGTAGTATTTCCTATCGAGAATATTGCGCAACATATGGAAGGGATTGAAGG...

Protein

Download Protein FASTA

1046 aa · LXL04_019174|LXL04_019174|OH1004|PROTEIN

MMHPEVLQSYFQEDLDQSQIYGLKYACEDHDFYSSITTPEDSSVITSDSHFHAISPCNFGVLPDLADEMQVVFPIENIAQHMEGIEGISGTELEDVLRWWGESEEMDYNSQEISMDLSFMLPPDEMEVDGQTSLCHLLKAYAEAMEMGQTELAKVILTCMNEKASPVGGTMERVAFNLSNSENQNDYINHESLKNYKSAFRAFYEIFPYGRFSHFSANSAILDAIMSDSGKVHIVDFDIGEGVQWPSMIESLAKLKKETK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019174`
TK1151 ID	TkA05G025850
OH-1004 ID	LXL04_019174
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.500
Protein coverage (%)	TK1151 100.000 / OH-1004 46.941 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019174

Location Chr04:25407844-25412127 (+)

Description Similar to NSP2: Protein NODULATION SIGNALING PATHWAY 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66770`	Probable transcription factor involved in plant development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019174 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009877 nodulation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G66770

mtr:11406790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.600

Rank 1 · LXL04_019174 · OH-1004

Nucleus0.507

Rank 2 · LXL04_019174 · OH-1004

Cell membrane0.066

Rank 3 · LXL04_019174 · OH-1004

Endoplasmic reticulum0.047

Rank 4 · LXL04_019174 · OH-1004

Plastid0.026

Rank 5 · LXL04_019174 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514.21GRAS135-482 aa

PF03514.21GRAS693-1046 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019174	`PF03514.21`	GRAS	135	482	8.9e-94	315.2
LXL04_019174	`PF03514.21`	GRAS	693	1046	8.9e-94	315.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FL03`	Arabidopsis thaliana	Scarecrow-like protein 4	28.788%	Swiss-Prot	weak database homology

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