LXL04_019124 | RubberDandelionOmics

Gene overview

LXL04_019124

Reference: OH-1004 Chr: Chr04 Coordinates: 24114435-24118359 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2592 bp · LXL04_019124|LXL04_019124|OH1004|cDNA

ATGAAAATTAGGGTTTTATATCTTTTACTTGTATTCTCTATATCATTGGGTCTCATCCATGGAGAAGATGAGAAGGCGAACAAGTTTCGTGACCGCGAGGCCACGGACGATAGCTTGGGCTATCCCAATTTCGATGAGGATGAACTATTGAATAAACAATGCCCTCAGAATTTGGAGCTAAGATGGCAGACTGAAGTTAGTTCTAGCATATATGCAACACCATTGATTGCTGACATTAACAGTGATGGCAAGCTTGATGT...

CDS

Download CDS FASTA

2592 bp · LXL04_019124|LXL04_019124|OH1004|CDS

ATGAAAATTAGGGTTTTATATCTTTTACTTGTATTCTCTATATCATTGGGTCTCATCCATGGAGAAGATGAGAAGGCGAACAAGTTTCGTGACCGCGAGGCCACGGACGATAGCTTGGGCTATCCCAATTTCGATGAGGATGAACTATTGAATAAACAATGCCCTCAGAATTTGGAGCTAAGATGGCAGACTGAAGTTAGTTCTAGCATATATGCAACACCATTGATTGCTGACATTAACAGTGATGGCAAGCTTGATGT...

Protein

Download Protein FASTA

863 aa · LXL04_019124|LXL04_019124|OH1004|PROTEIN

MKIRVLYLLLVFSISLGLIHGEDEKANKFRDREATDDSLGYPNFDEDELLNKQCPQNLELRWQTEVSSSIYATPLIADINSDGKLDVVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRSSGYMMSDKLEVPRLKVKRDWYVGLHPEVVDRSNPDVHDDLLTQQAAAFHSKESNHTSDADVADIKADVAEIKADVADIKVKQNETQQNPEPPKTTSSEEHSGSPLNPSDAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019124`
TK1151 ID	TkA05G020460
OH-1004 ID	LXL04_019124
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019124

Location Chr04:24114435-24118359 (+)

Description Similar to DEX1: Protein DEFECTIVE IN EXINE FORMATION 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09090`	Required for exine pattern formation during pollen development, especially for primexine deposition.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019124 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010208 pollen wall assembly Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005509 calcium ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G09090

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.615

Rank 1 · LXL04_019124 · OH-1004

Golgi apparatus0.360

Rank 2 · LXL04_019124 · OH-1004

Cytoplasm0.164

Rank 3 · LXL04_019124 · OH-1004

Cell membrane0.082

Rank 4 · LXL04_019124 · OH-1004

Nucleus0.082

Rank 5 · LXL04_019124 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01839.30FG-GAP472-494 aa

PF13517.13FG-GAP_3478-534 aa

PF13517.13FG-GAP_3524-580 aa

PF25292.1Beta-prop_CGLA533-643 aa

PF01839.30FG-GAP564-590 aa

PF23722.2Beta-sand_DEX1717-821 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019124	`PF01839.30`	FG-GAP	472	494	2.8e-17	62.9
LXL04_019124	`PF13517.13`	FG-GAP_3	478	534	9.4e-18	65.3
LXL04_019124	`PF13517.13`	FG-GAP_3	524	580	9.4e-18	65.3
LXL04_019124	`PF25292.1`	Beta-prop_CGLA	533	643	1.2e-09	38.8
LXL04_019124	`PF01839.30`	FG-GAP	564	590	2.8e-17	62.9
LXL04_019124	`PF23722.2`	Beta-sand_DEX1	717	821	9.7e-36	123.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IYM4`	Arabidopsis thaliana	Protein DEFECTIVE IN EXINE FORMATION 1	70.790%	Swiss-Prot	strong database homology

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