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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018157
Reference: OH-1004 Chr: Chr04 Coordinates: 7847136-7853619 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3171 bp · LXL04_018157|LXL04_018157|OH1004|cDNA

ATGGCGTCTGAGAAACTCACAGAGTACGAGCGCAAACGCCTGGAGAACATCAAGCGCAACCGTGAACAGCTTGAAGCTCTCAACATCCACTCCAAGCTTGCCGATCTGTCTGCCTCCGCCGAACGCCACAGGGAAGAGACTACATATTACAGAATTAATCCATATATGAAAGCAAAATCCGAAACCCCAGTTGTAAGCCGCAAATCtctaagaacccgaggaataaAGCCAGAGTTTAGACAAATACCTTACACAAAAAC...

CDS

Download CDS FASTA

3171 bp · LXL04_018157|LXL04_018157|OH1004|CDS

ATGGCGTCTGAGAAACTCACAGAGTACGAGCGCAAACGCCTGGAGAACATCAAGCGCAACCGTGAACAGCTTGAAGCTCTCAACATCCACTCCAAGCTTGCCGATCTGTCTGCCTCCGCCGAACGCCACAGGGAAGAGACTACATATTACAGAATTAATCCATATATGAAAGCAAAATCCGAAACCCCAGTTGTAAGCCGCAAATCTCTAAGAACCCGAGGAATAAAGCCAGAGTTTAGACAAATACCTTACACAAAAAC...

Protein

Download Protein FASTA

1056 aa · LXL04_018157|LXL04_018157|OH1004|PROTEIN

MASEKLTEYERKRLENIKRNREQLEALNIHSKLADLSASAERHREETTYYRINPYMKAKSETPVVSRKSLRTRGIKPEFRQIPYTKTKNVMPDKSPRELTFLSMRDVSISSKPDEPLVKKILSVDRRKGATKSVECRVRASIDIESMELMPENIARVVRDRILSVKFFPSADMRMVVVGNRLGDLGFWNVDSKNEDGDGDGIYMYRPHSGAITSICIQPFAINKITTCCQHGFIRTLDIEKETFDLTYHSEDPIFCMSQR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018157
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018157
LocationChr04:7847136-7853619 (+)
DescriptionSimilar to wdr76: WD repeat-containing protein 76
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018157 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006974 DNA damage response Biological Process
GO:2000001 regulation of DNA damage checkpoint Biological Process
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0090734 site of DNA damage Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0019899 enzyme binding Molecular Function
KEGG gene cross-reference
hsa:79968
mmu:241627
xla:735144
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.533
Rank 1 · LXL04_018157 · OH-1004
Cytoplasm0.468
Rank 2 · LXL04_018157 · OH-1004
Cell membrane0.047
Rank 3 · LXL04_018157 · OH-1004
Mitochondrion0.039
Rank 4 · LXL04_018157 · OH-1004
Endoplasmic reticulum0.036
Rank 5 · LXL04_018157 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24796.2WDR55158-326 aa
PF24807.2WD40_CDC20-Fz159-363 aa
PF24814.2WD40_Prp19160-408 aa
PF23381.2Beta-prop_IFT122_1st162-370 aa
PF23775.2Beta-prop_RIG_2nd171-353 aa
PF25168.2Beta-prop_WDR36-Utp21_2nd175-368 aa
PF25173.2Beta-prop_WDR3_1st184-367 aa
PF25175.2Beta-prop_WDR5201-446 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018157PF24796.2WDR551583263.2e-2279.7
LXL04_018157PF24807.2WD40_CDC20-Fz1593631.6e-28100.5
LXL04_018157PF24814.2WD40_Prp191604083.7e-29102.4
LXL04_018157PF23381.2Beta-prop_IFT122_1st1623701.2e-2797.7
LXL04_018157PF23775.2Beta-prop_RIG_2nd1713533e-1557.1
LXL04_018157PF25168.2Beta-prop_WDR36-Utp21_2nd1753681.4e-1661.4
LXL04_018157PF25173.2Beta-prop_WDR3_1st1843671.9e-2074.0
LXL04_018157PF25175.2Beta-prop_WDR52014461.3e-30107.4
LXL04_018157PF25171.2Beta-prop_WDR36-Utp21_1st2093661.1e-2384.7
LXL04_018157PF25391.2WD40_Gbeta2163631e-0938.6
LXL04_018157PF24817.2WD40_WDHD1_1st2234282.3e-1763.9
LXL04_018157PF24805.2EIF3I2623534.9e-1246.3
LXL04_018157PF25174.2Beta-prop_THOC32874285.7e-31108.2
LXL04_018157PF00400.39WD402923237.8e-1968.0
LXL04_018157PF23414.2Beta-prop_EML_23074207.3e-2072.2
LXL04_018157PF24814.2WD40_Prp197549573.7e-29102.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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