Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1689 bp · LXL04_018066|LXL04_018066|OH1004|cDNA
ATGTTGATAACAGGAAGAGAACTTACATCTTCATGGTCTCTTTCTTGCCGCTTACCAAATCAATCCCGCAGTTCAATTCACGCCTCTAGAGATCTTCGAAACAATTCATCCATTTGCAGAGCAACACTTTCCGTCAACGGAAAACCCAACTCTCTCTTTTCATTATCTTCATCCACCAGCTGTGAGAGCTCTAATTTTGATCCGCTAGGCATCAATCCAGGTAAATTAGCGGGTCTTAATTCCACTTGGGACAGTATTTT...
1689 bp · LXL04_018066|LXL04_018066|OH1004|CDS
ATGTTGATAACAGGAAGAGAACTTACATCTTCATGGTCTCTTTCTTGCCGCTTACCAAATCAATCCCGCAGTTCAATTCACGCCTCTAGAGATCTTCGAAACAATTCATCCATTTGCAGAGCAACACTTTCCGTCAACGGAAAACCCAACTCTCTCTTTTCATTATCTTCATCCACCAGCTGTGAGAGCTCTAATTTTGATCCGCTAGGCATCAATCCAGGTAAATTAGCGGGTCTTAATTCCACTTGGGACAGTATTTT...
Protein
Download Protein FASTA562 aa · LXL04_018066|LXL04_018066|OH1004|PROTEIN
MLITGRELTSSWSLSCRLPNQSRSSIHASRDLRNNSSICRATLSVNGKPNSLFSLSSSTSCESSNFDPLGINPGKLAGLNSTWDSILGLFSDRFDSNSSTRNDKSPSPKGAAAAIEDTSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDGNSILTTLDTFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAVVQAIGQALFLRPYVDDFSTQW...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018066 |
|---|---|
| TK1151 ID | TkA08G029900 |
| OH-1004 ID | LXL04_018066 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018066 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:5927183-5929976 (-) | ||||||||||||
| Description | Similar to SCY1: Preprotein translocase subunit SCY1, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation Biological Process GO:0010027 thylakoid membrane organization Biological Process GO:0015031 protein transport Biological Process GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0005048 signal sequence binding Molecular Function GO:0008320 protein transmembrane transporter activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT2G18710 dosa:Os08g0254500 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00344.26SecY186-472 aaPF00344.26SecY483-535 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018066 | PF00344.26 | SecY | 186 | 472 | 1.5e-87 | 294.6 |
| LXL04_018066 | PF00344.26 | SecY | 483 | 535 | 1.5e-87 | 294.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.