LXL04_018039 | RubberDandelionOmics

Gene overview

LXL04_018039

Reference: OH-1004 Chr: Chr04 Coordinates: 5447527-5458372 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1850 bp · LXL04_018039|LXL04_018039|OH1004|cDNA

GCAACTGCTAATCGCACATACATCCTCACCTTCCTTCAATCCCCAAACACTTCCCCTATAAATACAACACAATTCAACCCTTTCTCTCCATCTTACCAACAAAACATTCTTCAATGGCCTTCTCTTCATCCTCAAAGCTTTCGGTTTTCTTCTTATTTCTGGGGATCGCTTCAATAGTCTCCGCCGATTTCAACAATGAGTTTGATATCACTTGGGGCGATGGCCGCGGTAAAATACTCAACGGAGACATGTTAACGCTC...

CDS

Download CDS FASTA

1737 bp · LXL04_018039|LXL04_018039|OH1004|CDS

ATGGCCTTCTCTTCATCCTCAAAGCTTTCGGTTTTCTTCTTATTTCTGGGGATCGCTTCAATAGTCTCCGCCGATTTCAACAATGAGTTTGATATCACTTGGGGCGATGGCCGCGGTAAAATACTCAACGGAGACATGTTAACGCTCTCCCTCGATAAATCATCTGGTTCTGGATTTGAATCAAGAAACGAGTACCTATTTGGCAAGATTGATATGCAGCTGAAGCTCGTACCCGGGAACTCCGCCGGCACTGTAACTGC...

Protein

Download Protein FASTA

578 aa · LXL04_018039|LXL04_018039|OH1004|PROTEIN

MAFSSSSKLSVFFLFLGIASIVSADFNNEFDITWGDGRGKILNGDMLTLSLDKSSGSGFESRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSNWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPAADFHTYSILWNPQRIIFSVDGTPIREFKNAESIGVPFPKNQAMRIHSSLWNADDWATRGGLVKTDWSQAPFTASYRNFRADACVVSSGKSSCGGSASSGGSQAWLSEELDNTKQERLRWAQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018039`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018039

Location Chr04:5447527-5458372 (+)

Description Similar to XTH23: Probable xyloglucan endotransglucosylase/hydrolase protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25810`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g57560`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase.1995 · DOI: 10.1105/tpc.7.10.1555
`At5g57550`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018039 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009612 response to mechanical stimulus Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT4G25810

ath:AT5G57550

ath:AT5G57560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.374

Rank 1 · LXL04_018039 · OH-1004

Lysosome / Vacuole0.325

Rank 2 · LXL04_018039 · OH-1004

Endoplasmic reticulum0.180

Rank 3 · LXL04_018039 · OH-1004

Extracellular0.149

Rank 4 · LXL04_018039 · OH-1004

Nucleus0.133

Rank 5 · LXL04_018039 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1627-205 aa

PF06955.20XET_C239-274 aa

PF00722.29Glyco_hydro_16320-498 aa

PF06955.20XET_C532-575 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018039	`PF00722.29`	Glyco_hydro_16	27	205	1.3e-134	445.5
LXL04_018039	`PF06955.20`	XET_C	239	274	2e-37	127.5
LXL04_018039	`PF00722.29`	Glyco_hydro_16	320	498	1.3e-134	445.5
LXL04_018039	`PF06955.20`	XET_C	532	575	2e-37	127.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38910`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 23	72.727%	Swiss-Prot	weak database homology
`Q38857`	Arabidopsis thaliana	Xyloglucan endotransglucosylase/hydrolase protein 22	70.671%	Swiss-Prot	weak database homology
`Q38907`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 25	70.412%	Swiss-Prot	weak database homology

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