Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1899 bp · LXL04_017903|LXL04_017903|OH1004|cDNA
ATGTCTATCAGATTCAAATTCAGAAGTTCTGTCAATTTCGACACAATCGATATCGACGGTGGTAAACCCTACATATCGGTGGGACAACTCAGATCTAAAATTCTCTGTCAGAAGAAGTTAAACGGCATATGCCACAAAGACTTTGATCTCGTCTTCTTAGATGACCTCACTGGTCAAGGTTATTTTCTGATTCTACGAGTATACAtgcAGTACAATGACGATGAATTCAAGATTCCTAGTGGTTCGAGTGTTATCATAAA...
1899 bp · LXL04_017903|LXL04_017903|OH1004|CDS
ATGTCTATCAGATTCAAATTCAGAAGTTCTGTCAATTTCGACACAATCGATATCGACGGTGGTAAACCCTACATATCGGTGGGACAACTCAGATCTAAAATTCTCTGTCAGAAGAAGTTAAACGGCATATGCCACAAAGACTTTGATCTCGTCTTCTTAGATGACCTCACTGGTCAAGGTTATTTTCTGATTCTACGAGTATACATGCAGTACAATGACGATGAATTCAAGATTCCTAGTGGTTCGAGTGTTATCATAAA...
Protein
Download Protein FASTA632 aa · LXL04_017903|LXL04_017903|OH1004|PROTEIN
MSIRFKFRSSVNFDTIDIDGGKPYISVGQLRSKILCQKKLNGICHKDFDLVFLDDLTGQGYFLILRVYMQYNDDEFKIPSGSSVIIKRVPAEPVPLAMLRPHKHEASELSDDIPKGIYLFLATYCEILLMGGSNYITNADINHNKPEEVIPEKKPAPVDVEHIELEKVANTKGIDLEKVDLPSELRCPICNTYFKNAVMIPCCQHSFCEKCICDVLPLKSKCPKCSSTKYRVEHLLPNLSLRHAIEHFLESQLLATAPEV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017903 |
|---|---|
| TK1151 ID | TkA08G041650 |
| OH-1004 ID | LXL04_017903 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 57.753Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017903 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:3271320-3274212 (-) | |||||||||
| Description | Similar to At5g47430: E3 ubiquitin ligase PQT3-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006275 regulation of DNA replication Biological Process GO:0006397 mRNA processing Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006974 DNA damage response Biological Process GO:0006979 response to oxidative stress Biological Process GO:0009414 response to water deprivation Biological Process GO:0009651 response to salt stress Biological Process GO:0010555 response to mannitol Biological Process GO:0016567 protein ubiquitination Biological Process GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0042542 response to hydrogen peroxide Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT4G17410 ath:AT5G47430 hsa:5930 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08783.18DWNN3-90 aaPF13923.13zf-C3HC4_2186-225 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017903 | PF08783.18 | DWNN | 3 | 90 | 1.3e-14 | 54.9 |
| LXL04_017903 | PF13923.13 | zf-C3HC4_2 | 186 | 225 | 1.3e-07 | 32.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.