LXL04_017799 | RubberDandelionOmics

Gene overview

LXL04_017799

Reference: OH-1004 Chr: Chr04 Coordinates: 1358647-1362261 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2379 bp · LXL04_017799|LXL04_017799|OH1004|cDNA

ATGGAACTTCTGAGACCATCTCACCCTCCTATCACAATGGCCGCCGACGGCTGCTCTGGGTTTTCTCCGACGGCGAGTTGCGGAGATGGGTTTCACCGGAACAGTCTCCCGGCGACGGATATTGGCGGTGGTGATAAGGTTTATGTGGCTGTTGGGAAGTCGGTGGAAAAGGCAGTAGCTTTGTTTCACTGGACTTTTCGGAGGTTTAGAGGTCGAGAGATTTGCATACTTCATGTTCATCAACCTTCTCCCTTGATTCC...

CDS

Download CDS FASTA

2379 bp · LXL04_017799|LXL04_017799|OH1004|CDS

ATGGAACTTCTGAGACCATCTCACCCTCCTATCACAATGGCCGCCGACGGCTGCTCTGGGTTTTCTCCGACGGCGAGTTGCGGAGATGGGTTTCACCGGAACAGTCTCCCGGCGACGGATATTGGCGGTGGTGATAAGGTTTATGTGGCTGTTGGGAAGTCGGTGGAAAAGGCAGTAGCTTTGTTTCACTGGACTTTTCGGAGGTTTAGAGGTCGAGAGATTTGCATACTTCATGTTCATCAACCTTCTCCCTTGATTCC...

Protein

Download Protein FASTA

792 aa · LXL04_017799|LXL04_017799|OH1004|PROTEIN

MELLRPSHPPITMAADGCSGFSPTASCGDGFHRNSLPATDIGGGDKVYVAVGKSVEKAVALFHWTFRRFRGREICILHVHQPSPLIPTLLGKLPATQANPDVVREHRNKERDQMNKLLLDYMSLCVRSKFKASFVTIDSDQVRKGIVDLVNENGVQKLVMGAVPESWMKVKKNASKSSYAAKNVPPFCQIWFVNVNKGQLLYTKEPESNDVMPPSIHQDLNTSRSQSSRIERGIQQVHHRSISSHPLPSPLSVSSDSGCS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017799`
TK1151 ID	TkA08G050370
OH-1004 ID	LXL04_017799
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017799

Location Chr04:1358647-1362261 (+)

Description Similar to PUB33: U-box domain-containing protein 33

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45910`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At3g49060`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At5g51270`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0163000`	Functions as an E3 ubiquitin ligase.	MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171
`Os03g0424200`	Possesses E3 ubiquitin-protein ligase in vitro.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017799 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004842 ubiquitin-protein transferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G45910

ath:AT3G49060

dosa:Os03g0424200

dosa:Os06g0163000

osa:4340220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.437

Rank 1 · LXL04_017799 · OH-1004

Cell membrane0.425

Rank 2 · LXL04_017799 · OH-1004

Nucleus0.302

Rank 3 · LXL04_017799 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_017799 · OH-1004

Golgi apparatus0.038

Rank 5 · LXL04_017799 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase455-705 aa

PF07714.24PK_Tyr_Ser-Thr459-706 aa

PF04564.22U-box722-790 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017799	`PF00069.32`	Pkinase	455	705	2.3e-30	106.6
LXL04_017799	`PF07714.24`	PK_Tyr_Ser-Thr	459	706	2.1e-31	109.9
LXL04_017799	`PF04564.22`	U-box	722	790	8e-17	61.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GUH1`	Arabidopsis thaliana	U-box domain-containing protein 33	35.192%	Swiss-Prot	moderate database homology
`Q94A51`	Arabidopsis thaliana	U-box domain-containing protein 32	29.021%	Swiss-Prot	weak database homology
`Q9LU47`	Arabidopsis thaliana	Putative U-box domain-containing protein 53	28.731%	Swiss-Prot	weak database homology
`Q5WA76`	Oryza sativa subsp. japonica	U-box domain-containing protein 70	38.262%	Swiss-Prot	moderate database homology
`Q0DR28`	Oryza sativa subsp. japonica	U-box domain-containing protein 57	37.986%	Swiss-Prot	moderate database homology

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