LXL04_016893 | RubberDandelionOmics

Gene overview

LXL04_016893

Reference: OH-1004 Chr: Chr03 Coordinates: 136284454-136286925 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

882 bp · LXL04_016893|LXL04_016893|OH1004|cDNA

ATGGCGTTATCCACTCTCTCAACCGCcgtcaccaccaccaccactccACACCAGCTCCCCAAACTCTTCCACTCTCACTCCTCtgttggaagaaagaaagagtgTTTATTGATATTGAGGAGTGCCATGCACTATTCACCAATTCTCCCTGTTTCTATGGCGTTATCCACTCTCTCAACCGCcgtcaccaccaccaccactccACACCAGCTCCCCAAACTCTTCCACTCTCACTCCTCTCCCTCCACCATAACATTTCC...

CDS

Download CDS FASTA

882 bp · LXL04_016893|LXL04_016893|OH1004|CDS

ATGGCGTTATCCACTCTCTCAACCGCCGTCACCACCACCACCACTCCACACCAGCTCCCCAAACTCTTCCACTCTCACTCCTCTGTTGGAAGAAAGAAAGAGTGTTTATTGATATTGAGGAGTGCCATGCACTATTCACCAATTCTCCCTGTTTCTATGGCGTTATCCACTCTCTCAACCGCCGTCACCACCACCACCACTCCACACCAGCTCCCCAAACTCTTCCACTCTCACTCCTCTCCCTCCACCATAACATTTCC...

Protein

Download Protein FASTA

293 aa · LXL04_016893|LXL04_016893|OH1004|PROTEIN

MALSTLSTAVTTTTTPHQLPKLFHSHSSVGRKKECLLILRSAMHYSPILPVSMALSTLSTAVTTTTTPHQLPKLFHSHSSPSTITFPAKLTTTHHHFSVTPISKWRTNVSFLTSFLNKPKDATPIKEELLEAIAPLDRGSEASDEDQEIIEQIVRKLEAANPTKEPLKSPLLDGKWELIYTTSQSILQTKRPKFLRSRVNYQAINVDTLRAQNMESFPTFNQVTADLTPVSTKKVAVQFDYFKIFGLVPVKAPDTARGSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016893`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016893

Location Chr03:136284454-136286925 (-)

Description Similar to PAP4: Probable plastid-lipid-associated protein 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26070`	Probable plastid-lipid-associated protein 4, chloroplastic.	No verified direct reference in this release
`At3g26080`	Probable plastid-lipid-associated protein 5, chloroplastic.	No verified direct reference in this release
`At5g19940`	Probable plastid-lipid-associated protein 8, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0422000`	Essential for plastoquinone-9 (PQ-9) biosynthesis through its interaction with the solanesyl diphosphate synthase SPS2.	Conserved Function of Fibrillin5 in the Plastoquinone-9 Biosynthetic Pathway in Arabidopsis and Rice.2017 · DOI: 10.3389/fpls.2017.01197
`Os09g0133600`	Probable plastid-lipid-associated protein 2, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016893 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010117 photoprotection Biological Process

GO:0010236 plastoquinone biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010287 plastoglobule Cellular Component

KEGG gene cross-reference

ath:AT3G26070

ath:AT3G26080

ath:AT5G19940

dosa:Os04g0422000

osa:4335835

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.986

Rank 1 · LXL04_016893 · OH-1004

Mitochondrion0.025

Rank 2 · LXL04_016893 · OH-1004

Cytoplasm0.016

Rank 3 · LXL04_016893 · OH-1004

Nucleus0.014

Rank 4 · LXL04_016893 · OH-1004

Cell membrane0.011

Rank 5 · LXL04_016893 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04755.19PAP_fibrillin125-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016893	`PF04755.19`	PAP_fibrillin	125	283	4.6e-41	141.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LU85`	Arabidopsis thaliana	Probable plastid-lipid-associated protein 4, chloroplastic	58.182%	Swiss-Prot	strong database homology
`Q6DBN2`	Arabidopsis thaliana	Probable plastid-lipid-associated protein 5, chloroplastic	52.653%	Swiss-Prot	strong database homology
`Q941D3`	Arabidopsis thaliana	Probable plastid-lipid-associated protein 8, chloroplastic	28.409%	Swiss-Prot	weak database homology
`Q0JD85`	Oryza sativa subsp. japonica	Fibrillin protein 5 homolog	31.967%	Swiss-Prot	moderate database homology
`Q6K439`	Oryza sativa subsp. japonica	Probable plastid-lipid-associated protein 2, chloroplastic	27.778%	Swiss-Prot	weak database homology

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