LXL04_016599 | RubberDandelionOmics

Gene overview

LXL04_016599

Reference: OH-1004 Chr: Chr03 Coordinates: 128451207-128454605 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1308 bp · LXL04_016599|LXL04_016599|OH1004|cDNA

ATGGCTTTACGCCACCTCACTCCTCTTTCTCCTTTCACAACTCTCACTTGCTGCCGTCTTCCGCCGTTCCCCTCGCTATCCGTCACTACCTCACGTCGCTACAACCGATTTTCTTTTTCAGTAATGGCGTCCGCCTCGCGGAAGGTACTTGTTCCAATTGCTAACGGAACGGAGCCGATGGAGGCTGTGATTACCATCGATGTGCTCCGTAGGGGTGGTGCCGACGTTACCGTCGCTTCCGTTGAAAAGCAGCTTGGCGT...

CDS

Download CDS FASTA

1308 bp · LXL04_016599|LXL04_016599|OH1004|CDS

ATGGCTTTACGCCACCTCACTCCTCTTTCTCCTTTCACAACTCTCACTTGCTGCCGTCTTCCGCCGTTCCCCTCGCTATCCGTCACTACCTCACGTCGCTACAACCGATTTTCTTTTTCAGTAATGGCGTCCGCCTCGCGGAAGGTACTTGTTCCAATTGCTAACGGAACGGAGCCGATGGAGGCTGTGATTACCATCGATGTGCTCCGTAGGGGTGGTGCCGACGTTACCGTCGCTTCCGTTGAAAAGCAGCTTGGCGT...

Protein

Download Protein FASTA

435 aa · LXL04_016599|LXL04_016599|OH1004|PROTEIN

MALRHLTPLSPFTTLTCCRLPPFPSLSVTTSRRYNRFSFSVMASASRKVLVPIANGTEPMEAVITIDVLRRGGADVTVASVEKQLGVDACHGVKIVADALITDCVDTVFDLVSLPGGMPGASNLKDNTTLENIVKKQASEGRLYAAICAAPAVALGSWGVLKGLKATCYPSFMEQLSSAAATTVDSRVQQDGKAITSQGPGTAMDYSVTLVEQLFGKEKANEVSGPLLTNPKHTDQFIATELNKVQWTCSSVPKILVAIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016599`
TK1151 ID	TkAUNG039130
OH-1004 ID	LXL04_016599
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	74.800
Protein coverage (%)	TK1151 99.746 / OH-1004 90.345 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016599

Location Chr03:128451207-128454605 (-)

Description Similar to DJ1B: Protein DJ-1 homolog B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53280`	May be involved in oxidative stress response.	No verified direct reference in this release
`At3g14990`	Involved in oxidative stress response.	No verified direct reference in this release
`At4g34020`	Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.	A plant DJ-1 homolog is essential for Arabidopsis thaliana chloroplast development.2011 · DOI: 10.1371/journal.pone.0023731

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016599 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010310 regulation of hydrogen peroxide metabolic process Biological Process

GO:0034614 cellular response to reactive oxygen species Biological Process

GO:0046295 glycolate biosynthetic process Biological Process

GO:0048640 negative regulation of developmental growth Biological Process

GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction Biological Process

GO:1900409 positive regulation of cellular response to oxidative stress Biological Process

GO:1903189 glyoxal metabolic process Biological Process

GO:1905446 regulation of mitochondrial ATP synthesis coupled electron transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G53280

ath:AT3G14990

ath:AT4G34020

dme:Dmel_CG1349

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.506

Rank 1 · LXL04_016599 · OH-1004

Cytoplasm0.379

Rank 2 · LXL04_016599 · OH-1004

Nucleus0.183

Rank 3 · LXL04_016599 · OH-1004

Mitochondrion0.129

Rank 4 · LXL04_016599 · OH-1004

Peroxisome0.076

Rank 5 · LXL04_016599 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01965.31DJ-1_PfpI47-213 aa

PF01965.31DJ-1_PfpI254-416 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016599	`PF01965.31`	DJ-1_PfpI	47	213	1.2e-90	302.4
LXL04_016599	`PF01965.31`	DJ-1_PfpI	254	416	1.2e-90	302.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9MAH3`	Arabidopsis thaliana	Protein DJ-1 homolog B	69.212%	Swiss-Prot	strong database homology
`Q9FPF0`	Arabidopsis thaliana	Protein DJ-1 homolog A	64.031%	Swiss-Prot	strong database homology
`Q8VY09`	Arabidopsis thaliana	Protein DJ-1 homolog C	44.697%	Swiss-Prot	moderate database homology

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