LXL04_016547 | RubberDandelionOmics

Gene overview

LXL04_016547

Reference: OH-1004 Chr: Chr03 Coordinates: 126556757-126559058 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · LXL04_016547|LXL04_016547|OH1004|cDNA

ATGTCGGAAGATACTGCTTCATTGATAGCCAAGGCGGATTCCGATGGTGGTAGAAATGGTAGTTGTCGGTGGTGGAAGAAATTATTGGATTGGGAAGAGGCTAAATTCCAGATCTTATTTTCTCTCCCTATGATACTAACAAATGTTGCATACTATTGCATACCATTAGTATCCGTCATGTTCGCCGGCCACCTCGGAGAAGCTGAGCTCGCCGCCTCTAACCTTGCAAACTCCTGGGCCACCGTCACCGGACTCTCTTT...

CDS

Download CDS FASTA

1446 bp · LXL04_016547|LXL04_016547|OH1004|CDS

ATGTCGGAAGATACTGCTTCATTGATAGCCAAGGCGGATTCCGATGGTGGTAGAAATGGTAGTTGTCGGTGGTGGAAGAAATTATTGGATTGGGAAGAGGCTAAATTCCAGATCTTATTTTCTCTCCCTATGATACTAACAAATGTTGCATACTATTGCATACCATTAGTATCCGTCATGTTCGCCGGCCACCTCGGAGAAGCTGAGCTCGCCGCCTCTAACCTTGCAAACTCCTGGGCCACCGTCACCGGACTCTCTTT...

Protein

Download Protein FASTA

481 aa · LXL04_016547|LXL04_016547|OH1004|PROTEIN

MSEDTASLIAKADSDGGRNGSCRWWKKLLDWEEAKFQILFSLPMILTNVAYYCIPLVSVMFAGHLGEAELAASNLANSWATVTGLSFMVGLSGALETLCGQGFGAKIYRMLGIYLQTSCLISIFFSILISILWFFTEPILILLQQDPQISKLAALYIKYLIPGLFAYGLLNNILRFLQTQSIVAPLVICSLVPFILHIGITFVLVRFTSLSFIGAPIAVSISLWIALIMLGGYVLFNDKFKETWQGFSIESFQHVFTGLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016547`
TK1151 ID	TkA02G125320
OH-1004 ID	LXL04_016547
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016547

Location Chr03:126556757-126559058 (+)

Description Similar to DTX18: Protein DETOXIFICATION 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g23550`	Protein DETOXIFICATION 18.	No verified direct reference in this release
`At3g23560`	Required for protection of the roots from inhibitory compounds.	Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.2001 · DOI: 10.1105/tpc.010035
`At5g52450`	Protein DETOXIFICATION 16.	No verified direct reference in this release
`At2g34360`	Protein DETOXIFICATION 15.	No verified direct reference in this release
`At1g73700`	Protein DETOXIFICATION 17.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016547 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009624 response to nematode Biological Process

GO:0009636 response to toxic substance Biological Process

GO:0098542 defense response to other organism Biological Process

GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G73700

ath:AT2G34360

ath:AT3G23550

ath:AT3G23560

ath:AT5G52450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.380

Rank 1 · LXL04_016547 · OH-1004

Cell membrane0.352

Rank 2 · LXL04_016547 · OH-1004

Endoplasmic reticulum0.109

Rank 3 · LXL04_016547 · OH-1004

Cytoplasm0.087

Rank 4 · LXL04_016547 · OH-1004

Golgi apparatus0.080

Rank 5 · LXL04_016547 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554.24MatE43-202 aa

PF01554.24MatE264-425 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016547	`PF01554.24`	MatE	43	202	1e-59	201.6
LXL04_016547	`PF01554.24`	MatE	264	425	1e-59	201.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LUH3`	Arabidopsis thaliana	Protein DETOXIFICATION 18	65.859%	Swiss-Prot	strong database homology
`Q9LUH2`	Arabidopsis thaliana	Protein DETOXIFICATION 19	64.565%	Swiss-Prot	strong database homology
`Q9FHB6`	Arabidopsis thaliana	Protein DETOXIFICATION 16	44.921%	Swiss-Prot	moderate database homology
`F4IHU9`	Arabidopsis thaliana	Protein DETOXIFICATION 15	43.694%	Swiss-Prot	moderate database homology
`Q9C9U1`	Arabidopsis thaliana	Protein DETOXIFICATION 17	43.333%	Swiss-Prot	moderate database homology

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