LXL04_016476 | RubberDandelionOmics

Gene overview

LXL04_016476

Reference: OH-1004 Chr: Chr03 Coordinates: 124404069-124409336 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1665 bp · LXL04_016476|LXL04_016476|OH1004|cDNA

ATGTCAATGAACTCACCCACCATTTTgctcttcttctttctcttttCTGCTTCTGCTCCACTTTTCGAAGCCTTCAACAATGGCGACGGAGGATCCAAATtggaagaaaaagaagaagccCATATCAAAAGATCCGATTTCCCACCTGGGTTTCTTTTCGGAGCAGCCACTTCTTCTTACCAAGTTGAAGGTGCTTATCTTGCTGATGGTAAATCGTTAAGCAATTGGGATGTATTTTGTCATTCCGCTGTGGAGAAAAT...

CDS

Download CDS FASTA

1665 bp · LXL04_016476|LXL04_016476|OH1004|CDS

ATGTCAATGAACTCACCCACCATTTTGCTCTTCTTCTTTCTCTTTTCTGCTTCTGCTCCACTTTTCGAAGCCTTCAACAATGGCGACGGAGGATCCAAATTGGAAGAAAAAGAAGAAGCCCATATCAAAAGATCCGATTTCCCACCTGGGTTTCTTTTCGGAGCAGCCACTTCTTCTTACCAAGTTGAAGGTGCTTATCTTGCTGATGGTAAATCGTTAAGCAATTGGGATGTATTTTGTCATTCCGCTGTGGAGAAAAT...

Protein

Download Protein FASTA

554 aa · LXL04_016476|LXL04_016476|OH1004|PROTEIN

MSMNSPTILLFFFLFSASAPLFEAFNNGDGGSKLEEKEEAHIKRSDFPPGFLFGAATSSYQVEGAYLADGKSLSNWDVFCHSAVEKMEIMENGDIADDHYHLFLKDIENMHSLGVKAYKFSISWARILPRGRFGEVNPEGILFYNKIIDNLLLKGIEPFVTLFHNDFPQELEEIYGSWLNPQMQYISFLKISFNYSMYYGGREEFLHLAEICFNSFGDRVKYWITINEPNIFIEWAYEYALFPPSRCSEPFGNCLFGNSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016476`
TK1151 ID	TkA02G136030
OH-1004 ID	LXL04_016476
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.200
Protein coverage (%)	TK1151 100.000 / OH-1004 84.477 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016476

Location Chr03:124404069-124409336 (-)

Description Similar to BGLU18: Beta-glucosidase 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61810`	Hydrolyzes p-nitrophenyl beta-D-glucoside and natural glucosides such as syringin, coniferin and p-coumaryl alcohol glucoside.	Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides.2006 · DOI: 10.1016/j.phytochem.2006.05.022
`At1g61820`	Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside and natural glucosides such as salicin, p-coumaryl alcohol glucoside, phenyl-beta-D-glucoside, coniferin, syringin and arbutin.	Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides.2006 · DOI: 10.1016/j.phytochem.2006.05.022

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0513900`	Hydrolyzes glycosides and monolignol glucosides.	No verified direct reference in this release
`Os04g0513400`	Hydrolyzes glycosides and monolignol glucosides.	No verified direct reference in this release
`Os04g0513100`	Probable inactive beta-glucosidase 14.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016476 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0016137 glycoside metabolic process Biological Process

GO:0033491 coniferin metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0008422 beta-glucosidase activity Molecular Function

GO:0033907 beta-D-fucosidase activity Molecular Function

GO:0047782 coniferin beta-glucosidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G61810

ath:AT1G61820

dosa:Os04g0513100

dosa:Os04g0513400

dosa:Os04g0513900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.268

Rank 1 · LXL04_016476 · OH-1004

Lysosome / Vacuole0.258

Rank 2 · LXL04_016476 · OH-1004

Plastid0.200

Rank 3 · LXL04_016476 · OH-1004

Cytoplasm0.094

Rank 4 · LXL04_016476 · OH-1004

Peroxisome0.077

Rank 5 · LXL04_016476 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00232.25Glyco_hydro_145-536 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016476	`PF00232.25`	Glyco_hydro_1	45	536	2.8e-134	448.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80689`	Arabidopsis thaliana	Beta-glucosidase 45	48.509%	Swiss-Prot	moderate database homology
`O80690`	Arabidopsis thaliana	Beta-glucosidase 46	48.479%	Swiss-Prot	moderate database homology
`Q7XSK0`	Oryza sativa subsp. japonica	Beta-glucosidase 18	52.024%	Swiss-Prot	strong database homology
`Q7XSK2`	Oryza sativa subsp. japonica	Beta-glucosidase 16	51.220%	Swiss-Prot	strong database homology
`Q7XPY7`	Oryza sativa subsp. japonica	Probable inactive beta-glucosidase 14	50.203%	Swiss-Prot	strong database homology

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