Gene Card
Gene overview
cDNA / CDS / Protein Sequences
447 bp · LXL04_016220|LXL04_016220|OH1004|cDNA
ATGGTGGGATTAAACGTCGTGACACCTGTCCCCATTCCATCAATGcaaaagggtattttgggaaatCCCATTAAACCTTCTCCAAGCACTGGAGGTAGAATTGTTGGAAGAGGGCAAAGgtgtggtggtggtggtggtggttggaGTCGTGGAAGTGGGAGGAATGGTGGTGGGCCGCCAAAGAAAGTGATGTCGGCTGATGAGCTTGATGCTGATTTGGAGAATTTGGCAACAGAGTCACCTGGATCCAATGGCCCCAA...
447 bp · LXL04_016220|LXL04_016220|OH1004|CDS
ATGGTGGGATTAAACGTCGTGACACCTGTCCCCATTCCATCAATGCAAAAGGGTATTTTGGGAAATCCCATTAAACCTTCTCCAAGCACTGGAGGTAGAATTGTTGGAAGAGGGCAAAGGTGTGGTGGTGGTGGTGGTGGTTGGAGTCGTGGAAGTGGGAGGAATGGTGGTGGGCCGCCAAAGAAAGTGATGTCGGCTGATGAGCTTGATGCTGATTTGGAGAATTTGGCAACAGAGTCACCTGGATCCAATGGCCCCAA...
Protein
Download Protein FASTA148 aa · LXL04_016220|LXL04_016220|OH1004|PROTEIN
MVGLNVVTPVPIPSMQKGILGNPIKPSPSTGGRIVGRGQRCGGGGGGWSRGSGRNGGGPPKKVMSADELDADLENLATESPGSNGPKTEDKVTDNPKIQAMGIYQGHSDTVEDVQFCPSSAQEFCSVGDDTGLILWDARTGSSAVVKV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016220 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016220 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:115516911-115518039 (+) | |||||||||
| Description | Similar to MSI5: WD-40 repeat-containing protein MSI5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009627 systemic acquired resistance Biological Process GO:0009908 flower development Biological Process GO:0010224 response to UV-B Biological Process GO:0010629 negative regulation of gene expression Biological Process GO:0030154 cell differentiation Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0046689 response to mercury ion Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G19520 ath:AT4G29730 ddi:DDB_G0282529 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25174.2Beta-prop_THOC3103-143 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016220 | PF25174.2 | Beta-prop_THOC3 | 103 | 143 | 2e-06 | 27.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.