Gene Card
Gene overview
cDNA / CDS / Protein Sequences
10938 bp · LXL04_016144|LXL04_016144|OH1004|cDNA
ATGGAGATGAGACAAAAGGAAAAAGAGTGGACTTTTAAGCCTCCCAAAATCAAGTCTTTTATCAATGGTGTAACTGCTGCTCCACTTGAAAGTATCGAGGAACCCTTGAAAAACTTCTTTTGGGACTTTGACAAGGGAGACTTCCATCACTGGATTGATCTATTCAACCACTTTGATACTTTCTTTGAGAAATACATAAAACCAAGGAAAGATTTGCAAGTTGAGGATGATTTCTTGGAGTTTGACCCTCCCTTCCCAAG...
10938 bp · LXL04_016144|LXL04_016144|OH1004|CDS
ATGGAGATGAGACAAAAGGAAAAAGAGTGGACTTTTAAGCCTCCCAAAATCAAGTCTTTTATCAATGGTGTAACTGCTGCTCCACTTGAAAGTATCGAGGAACCCTTGAAAAACTTCTTTTGGGACTTTGACAAGGGAGACTTCCATCACTGGATTGATCTATTCAACCACTTTGATACTTTCTTTGAGAAATACATAAAACCAAGGAAAGATTTGCAAGTTGAGGATGATTTCTTGGAGTTTGACCCTCCCTTCCCAAG...
Protein
Download Protein FASTA3645 aa · LXL04_016144|LXL04_016144|OH1004|PROTEIN
MEMRQKEKEWTFKPPKIKSFINGVTAAPLESIEEPLKNFFWDFDKGDFHHWIDLFNHFDTFFEKYIKPRKDLQVEDDFLEFDPPFPRESVLQILRVVRIILENCTNKHFYSSYEHHLSSLLASTDADVVEACLQTLSAFLKKSIGKHIIRDASLNSKLFAFTQGWGGKDEGLGLVSCSVENISDSVAHELGSTLHFEFYAVNESSTDSTQGLQIIHLPKINTYEKSDLELLHKLVEEYKVPPSLRFSLLTRLRFARAFTS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016144 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016144 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:112138489-112152815 (-) | |||||||||
| Description | Similar to UPL1: E3 ubiquitin-protein ligase UPL1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0016567 protein ubiquitination Biological Process GO:0051028 mRNA transport Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0009506 plasmodesma Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G55860 ath:AT1G70320 ncr:NCU08501 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06012.18DUF90887-142 aaPF06012.18DUF908203-358 aaPF06025.18DUF913419-760 aaPF00627.38UBA1286-1323 aaPF22562.3UBA_71287-1331 aaPF14377.12UBM2527-2556 aaPF14377.12UBM2580-2608 aaPF14377.12UBM2615-2646 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016144 | PF06012.18 | DUF908 | 87 | 142 | 8.1e-39 | 134.8 |
| LXL04_016144 | PF06012.18 | DUF908 | 203 | 358 | 8.1e-39 | 134.8 |
| LXL04_016144 | PF06025.18 | DUF913 | 419 | 760 | 4.8e-88 | 296.5 |
| LXL04_016144 | PF00627.38 | UBA | 1286 | 1323 | 1.2e-08 | 35.3 |
| LXL04_016144 | PF22562.3 | UBA_7 | 1287 | 1331 | 2.3e-14 | 53.8 |
| LXL04_016144 | PF14377.12 | UBM | 2527 | 2556 | 3.6e-30 | 103.1 |
| LXL04_016144 | PF14377.12 | UBM | 2580 | 2608 | 3.6e-30 | 103.1 |
| LXL04_016144 | PF14377.12 | UBM | 2615 | 2646 | 3.6e-30 | 103.1 |
| LXL04_016144 | PF00632.31 | HECT | 3334 | 3644 | 1.3e-96 | 324.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.