LXL04_015104 | RubberDandelionOmics

Gene overview

LXL04_015104

Reference: OH-1004 Chr: Chr03 Coordinates: 63706464-63708986 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1500 bp · LXL04_015104|LXL04_015104|OH1004|cDNA

ATGTCCTTCGCCGTTAACCCACCGCCGGCCGTCCGACACTTCCCCCTCTCCCGGTCAACCGTCGTCCGCTCGCCACGCGTCTCCATGGTGGCCCGATCCAACACCGGTCTCTCAGTCTCCACCGCTGCCGCACTCCCTATATTAACCAAATTACAAAACGATTGCGCCACACCTCTCCCCGTCCTCCGCCACATTGCTGACGCCATGGCAACTGATATGCGAGCTGGCCTCGCAGTTGATGGCGGCAGTGATCTCAAGAT...

CDS

Download CDS FASTA

1500 bp · LXL04_015104|LXL04_015104|OH1004|CDS

ATGTCCTTCGCCGTTAACCCACCGCCGGCCGTCCGACACTTCCCCCTCTCCCGGTCAACCGTCGTCCGCTCGCCACGCGTCTCCATGGTGGCCCGATCCAACACCGGTCTCTCAGTCTCCACCGCTGCCGCACTCCCTATATTAACCAAATTACAAAACGATTGCGCCACACCTCTCCCCGTCCTCCGCCACATTGCTGACGCCATGGCAACTGATATGCGAGCTGGCCTCGCAGTTGATGGCGGCAGTGATCTCAAGAT...

Protein

Download Protein FASTA

499 aa · LXL04_015104|LXL04_015104|OH1004|PROTEIN

MSFAVNPPPAVRHFPLSRSTVVRSPRVSMVARSNTGLSVSTAAALPILTKLQNDCATPLPVLRHIADAMATDMRAGLAVDGGSDLKMILSYVDSLPTGNERGLFYALDLGGTNFRVLRTQLGGKDERVIDTECEQVSIPQDIMFGTSEELFDFIASALANFVKKEGGKFVLPNDRSRETGFTFSFPVKQTSIDSGILIKWTKGFAVSGTPGKDIVACLNEAMGRQGLNMRVSALVNDTVATLAGARYWDDDVMVAVILGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015104`
TK1151 ID	TkA02G368030
OH-1004 ID	LXL04_015104
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015104

Location Chr03:63706464-63708986 (-)

Description Similar to HXK2: Hexokinase-2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47840`	Fructose and glucose phosphorylating enzyme.	No verified direct reference in this release
`At4g29130`	Fructose and glucose phosphorylating enzyme.	Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling.2003 · DOI: 10.1126/science.1080585 Mitochondria-associated hexokinases play a role in the control of programmed cell death in Nicotiana benthamiana.2006 · DOI: 10.1105/tpc.106.041509 Cooperative control between AtRGS1 and AtHXK1 in a WD40-repeat protein pathway in Arabidopsis thaliana.2015 · DOI: 10.3389/fpls.2015.00851 Sugar and hexokinase suppress expression of PIP aquaporins and reduce leaf hydraulics that preserves leaf water potential.2017 · DOI: 10.1111/tpj.13568 The role of HEXOKINASE1 in Arabidopsis leaf growth.2019 · DOI: 10.1007/s11103-018-0803-0 Guard cells control hypocotyl elongation through HXK1, HY5, and PIF4.2021 · DOI: 10.1038/s42003-021-02283-y HEXOKINASE1 forms a nuclear complex with the PRC2 subunits CURLY LEAF and SWINGER to regulate glucose signaling.2022 · DOI: 10.1111/jipb.13261

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0197100`	Fructose and glucose phosphorylating enzyme.	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.).2006 · DOI: 10.1007/s00425-006-0251-y

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015104 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001678 intracellular glucose homeostasis Biological Process

GO:0006006 glucose metabolic process Biological Process

GO:0006096 glycolytic process Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0010148 transpiration Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0010255 glucose mediated signaling pathway Biological Process

GO:0012501 programmed cell death Biological Process

GO:0019320 hexose catabolic process Biological Process

GO:0051156 glucose 6-phosphate metabolic process Biological Process

GO:0090332 stomatal closure Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

KEGG gene cross-reference

ath:AT1G47840

ath:AT4G29130

dosa:Os07g0197100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.476

Rank 1 · LXL04_015104 · OH-1004

Plastid0.196

Rank 2 · LXL04_015104 · OH-1004

Peroxisome0.186

Rank 3 · LXL04_015104 · OH-1004

Nucleus0.154

Rank 4 · LXL04_015104 · OH-1004

Mitochondrion0.119

Rank 5 · LXL04_015104 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00349.28Hexokinase_148-247 aa

PF03727.23Hexokinase_2254-492 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015104	`PF00349.28`	Hexokinase_1	48	247	4.4e-68	229.8
LXL04_015104	`PF03727.23`	Hexokinase_2	254	492	2.3e-81	273.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZG4`	Arabidopsis thaliana	Hexokinase-like 1 protein	64.741%	Swiss-Prot	strong database homology
`Q42525`	Arabidopsis thaliana	Hexokinase-1	58.022%	Swiss-Prot	strong database homology
`Q6Z398`	Oryza sativa subsp. japonica	Hexokinase-4, chloroplastic	72.931%	Swiss-Prot	strong database homology

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