LXL04_015028 | RubberDandelionOmics

Gene overview

LXL04_015028

Reference: OH-1004 Chr: Chr03 Coordinates: 62163223-62164995 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1680 bp · LXL04_015028|LXL04_015028|OH1004|cDNA

ATGAGTTATTCAGCCGAACGAATTGTGCTATTTCTTTTTTCTTATTATTCTTCTTGTACTTCATATTTCTCAGTGCCCTTATATTCTCCAGAAAACACTAATACACACACAATGGATTATTCGCCCAAACTAATTGCATTACTTATTTTTGTATTATGCGTCTTCTACTTAGCAGTTTTCAGTCGAATGAAGTCCAAAGTACGGTCGGCAAGAGAAGCTCCTGAAGTCGACGGTGCATGGCCGATCATCGGACACCTCCA...

CDS

Download CDS FASTA

1680 bp · LXL04_015028|LXL04_015028|OH1004|CDS

ATGAGTTATTCAGCCGAACGAATTGTGCTATTTCTTTTTTCTTATTATTCTTCTTGTACTTCATATTTCTCAGTGCCCTTATATTCTCCAGAAAACACTAATACACACACAATGGATTATTCGCCCAAACTAATTGCATTACTTATTTTTGTATTATGCGTCTTCTACTTAGCAGTTTTCAGTCGAATGAAGTCCAAAGTACGGTCGGCAAGAGAAGCTCCTGAAGTCGACGGTGCATGGCCGATCATCGGACACCTCCA...

Protein

Download Protein FASTA

559 aa · LXL04_015028|LXL04_015028|OH1004|PROTEIN

MSYSAERIVLFLFSYYSSCTSYFSVPLYSPENTNTHTMDYSPKLIALLIFVLCVFYLAVFSRMKSKVRSAREAPEVDGAWPIIGHLHLLGGGTQLLHRTLGAMADKYGPAFNIRLGTRPAFVVSNWEVAKECFTINDKALASRPKTAAVKHMGYNYAIFGFAPFTPFWREMRKITTHELLSNRRLEMLKDVRSSEINSGIAELYGRWVENDRNPLIVDLIKWLEPMLFNIIVMMVAGKRYYGVGADIHEARRCHKALNEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015028`
TK1151 ID	TkA02G373310
OH-1004 ID	LXL04_015028
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015028

Location Chr03:62163223-62164995 (+)

Description Similar to CYP82C4: Xanthotoxin 5-hydroxylase CYP82C4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31940`	Can hydroxylate xanthotoxin (8-methoxypsoralen) to form 5- hydroxyxanthotoxin (5-hydroxy-8-methoxypsoralen) in vivo and in vitro.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 Arabidopsis CYP82C4 expression is dependent on Fe availability and circadian rhythm, and correlates with genes involved in the early Fe deficiency response.2011 · DOI: 10.1016/j.jplph.2010.11.020
`At4g31970`	Involved in the biosynthetic pathway to 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence.2015 · DOI: 10.1038/nature14907
`At4g31950`	Cytochrome P450 82C3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015028 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009821 alkaloid biosynthetic process Biological Process

GO:0010039 response to iron ion Biological Process

GO:0010446 response to alkaline pH Biological Process

GO:0071281 cellular response to iron ion Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0106146 sideretin biosynthesis Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

KEGG gene cross-reference

ag:ALG05144

ag:UQZ09627

ath:AT4G31940

ath:AT4G31950

ath:AT4G31970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.915

Rank 1 · LXL04_015028 · OH-1004

Plastid0.047

Rank 2 · LXL04_015028 · OH-1004

Cell membrane0.038

Rank 3 · LXL04_015028 · OH-1004

Cytoplasm0.036

Rank 4 · LXL04_015028 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_015028 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45078-543 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015028	`PF00067.28`	p450	78	543	9.5e-79	266.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ46`	Arabidopsis thaliana	Xanthotoxin 5-hydroxylase CYP82C4	58.902%	Swiss-Prot	strong database homology
`O49394`	Arabidopsis thaliana	Xanthotoxin 5-hydroxylase CYP82C2	57.875%	Swiss-Prot	strong database homology
`O49396`	Arabidopsis thaliana	Cytochrome P450 82C3	55.871%	Swiss-Prot	strong database homology

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