LXL04_014932 | RubberDandelionOmics

Gene overview

LXL04_014932

Reference: OH-1004 Chr: Chr03 Coordinates: 59832473-59834917 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1065 bp · LXL04_014932|LXL04_014932|OH1004|cDNA

ATGACGACGGTCGTGCCTACATCGGAGGAGGATCCCATCCTCTCTGTCTTTCGTTTTACCGCCGAGATGTCCTGGGCTGAAGCCGGATCGAGATTAGAGTTCCATACGCATGTAGCTGAACCACGAGTTACTAGTTTATGCTTGGAGGCTCAAGAATGCATGATTGCTGGCAGATGGTTCGATTTGGCTTCGCTGATGCTTACTTCGGCTGAGTTGGTGTTTCCGAAAGCTTCGGATAAAGGACCAATTGCTAAAGAGTC...

CDS

Download CDS FASTA

1065 bp · LXL04_014932|LXL04_014932|OH1004|CDS

ATGACGACGGTCGTGCCTACATCGGAGGAGGATCCCATCCTCTCTGTCTTTCGTTTTACCGCCGAGATGTCCTGGGCTGAAGCCGGATCGAGATTAGAGTTCCATACGCATGTAGCTGAACCACGAGTTACTAGTTTATGCTTGGAGGCTCAAGAATGCATGATTGCTGGCAGATGGTTCGATTTGGCTTCGCTGATGCTTACTTCGGCTGAGTTGGTGTTTCCGAAAGCTTCGGATAAAGGACCAATTGCTAAAGAGTC...

Protein

Download Protein FASTA

354 aa · LXL04_014932|LXL04_014932|OH1004|PROTEIN

MTTVVPTSEEDPILSVFRFTAEMSWAEAGSRLEFHTHVAEPRVTSLCLEAQECMIAGRWFDLASLMLTSAELVFPKASDKGPIAKESAKNQDRWLLVNLQSTREFSSHMLNRDTWANEAVSHTIMSNFIFWQVCDDTEDGSKIKTYYKLDSVPVTLVIDPVTGQKMRLWRGMIEPENLLEDLLQFMDGSPKNHHISFIISAYHTNVHEKTLRPHLPKSKPCQVSLLFSVCESGYNEKSVEEPLKDLNGDIETEKKVPESE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014932`
TK1151 ID	TkA02G383140
OH-1004 ID	LXL04_014932
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014932

Location Chr03:59832473-59834917 (+)

Description Similar to PUX7: Plant UBX domain-containing protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14570`	Acts as a bridge between CDC48A and ubiquitin, suggesting a role in targeted protein degradation.	Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.2013 · DOI: 10.1016/j.gene.2013.05.056
`At4g14250`	Putative plant UBX domain-containing protein 14.	No verified direct reference in this release
`At4g14245`	Plant UBX domain-containing protein 16.	No verified direct reference in this release
`At1g59550`	Putative plant UBX domain-containing protein 15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014932 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0030674 protein-macromolecule adaptor activity Molecular Function

GO:0043130 ubiquitin binding Molecular Function

KEGG gene cross-reference

ath:AT1G14570

ath:AT1G59550

spo:2541532

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.523

Rank 1 · LXL04_014932 · OH-1004

Nucleus0.355

Rank 2 · LXL04_014932 · OH-1004

Mitochondrion0.098

Rank 3 · LXL04_014932 · OH-1004

Cell membrane0.097

Rank 4 · LXL04_014932 · OH-1004

Endoplasmic reticulum0.093

Rank 5 · LXL04_014932 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13899.13Thioredoxin_784-160 aa

PF00789.27UBX278-333 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014932	`PF13899.13`	Thioredoxin_7	84	160	5.4e-13	49.6
LXL04_014932	`PF00789.27`	UBX	278	333	3.1e-08	34.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94JZ8`	Arabidopsis thaliana	Plant UBX domain-containing protein 7	52.303%	Swiss-Prot	strong database homology
`P0DKI4`	Arabidopsis thaliana	Putative plant UBX domain-containing protein 14	48.454%	Swiss-Prot	moderate database homology
`P0DKI5`	Arabidopsis thaliana	Plant UBX domain-containing protein 16	43.791%	Swiss-Prot	moderate database homology
`Q94HV8`	Arabidopsis thaliana	Putative plant UBX domain-containing protein 15	39.085%	Swiss-Prot	moderate database homology

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