Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1410 bp · LXL04_014648|LXL04_014648|OH1004|cDNA
ATGCCGATAGAGATGCCAAAGGGGTTACCATTCTCGGTGGACACATGGACGCCATCTTCAAACAGTAAGAGACACCATTTTCTAACACACGCCCACAAAGATCATTCTCAAGGAATCTCCACTCACTCTTCATTTCCAATTTACGCTACCCCTCTCACAAAATCTCTCACTCTCAACTATTTCCCGCAGCTTAATGAGTCGTTATTCGTGGATATTGAGATTGGTCAGTCAATTGCTATTAATGATCCCGTTGAAACTTT...
1410 bp · LXL04_014648|LXL04_014648|OH1004|CDS
ATGCCGATAGAGATGCCAAAGGGGTTACCATTCTCGGTGGACACATGGACGCCATCTTCAAACAGTAAGAGACACCATTTTCTAACACACGCCCACAAAGATCATTCTCAAGGAATCTCCACTCACTCTTCATTTCCAATTTACGCTACCCCTCTCACAAAATCTCTCACTCTCAACTATTTCCCGCAGCTTAATGAGTCGTTATTCGTGGATATTGAGATTGGTCAGTCAATTGCTATTAATGATCCCGTTGAAACTTT...
Protein
Download Protein FASTA469 aa · LXL04_014648|LXL04_014648|OH1004|PROTEIN
MPIEMPKGLPFSVDTWTPSSNSKRHHFLTHAHKDHSQGISTHSSFPIYATPLTKSLTLNYFPQLNESLFVDIEIGQSIAINDPVETFTVTAFDANHCPGAVMFLFEGTFGNILHTGDCRLTPECLQKLPEKYLGKTSREPKCRLDYVFLDCTFATFSSKMPSKHLAIRQVIDCIWKHPEAQVVYLTCDLLGQEDILVNISQTFGSKIFINKETNPECFKSLSLTIPNILSQDPSSRFHLFDGFPRLSERAEAKINEARIK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_014648 |
|---|---|
| TK1151 ID | TkA02G406660 |
| OH-1004 ID | LXL04_014648 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 97.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 41.365Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_014648 |
|---|---|
| Location | Chr03:54326817-54328684 (-) |
| Description | Similar to DCLRE1B: 5' exonuclease Apollo |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000723 telomere maintenance Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006303 double-strand break repair via nonhomologous end joining Biological Process GO:0010833 telomere maintenance via telomere lengthening Biological Process GO:0016233 telomere capping Biological Process GO:0031627 telomeric loop formation Biological Process GO:0031848 protection from non-homologous end joining at telomere Biological Process GO:0031860 telomeric 3' overhang formation Biological Process GO:0036297 interstrand cross-link repair Biological Process GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component |
| KEGG gene cross-reference | gga:428269 hsa:64858 mmu:140917 rno:310745 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12706.14Lactamase_B_227-178 aaPF07522.20DRMBL227-318 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_014648 | PF12706.14 | Lactamase_B_2 | 27 | 178 | 2.7e-07 | 31.1 |
| LXL04_014648 | PF07522.20 | DRMBL | 227 | 318 | 9.5e-14 | 52.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.