LXL04_014411 | RubberDandelionOmics

Gene overview

LXL04_014411

Reference: OH-1004 Chr: Chr03 Coordinates: 48680643-48681119 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

477 bp · LXL04_014411|LXL04_014411|OH1004|cDNA

ATGCCTACGATGAAGAAGAACACTAACGCCGTCAGCGTCGGCTGCGGCTGCCGGAGAATAAACCTCGCCAAGATCTTCCACTTCAAACCCACCAAACACAAACGCAGCCGTTACTATTCCGACGTACGCCGCCACCACGACCATACCTCCTCCTCATCATGGAGCAACACCACCACGGCGACATTATCACCAAATACCTCGGAGACAACCACTCATGAATCCAAATTGGAGAGCTCGAGACCATTGCAAGGCGGATTTGG...

CDS

Download CDS FASTA

477 bp · LXL04_014411|LXL04_014411|OH1004|CDS

ATGCCTACGATGAAGAAGAACACTAACGCCGTCAGCGTCGGCTGCGGCTGCCGGAGAATAAACCTCGCCAAGATCTTCCACTTCAAACCCACCAAACACAAACGCAGCCGTTACTATTCCGACGTACGCCGCCACCACGACCATACCTCCTCCTCATCATGGAGCAACACCACCACGGCGACATTATCACCAAATACCTCGGAGACAACCACTCATGAATCCAAATTGGAGAGCTCGAGACCATTGCAAGGCGGATTTGG...

Protein

Download Protein FASTA

158 aa · LXL04_014411|LXL04_014411|OH1004|PROTEIN

MPTMKKNTNAVSVGCGCRRINLAKIFHFKPTKHKRSRYYSDVRRHHDHTSSSSWSNTTTATLSPNTSETTTHESKLESSRPLQGGFGWLSGNSLAVEKDSNDPYVDFRESMLQMIMEKEIYGKDELRELLNCFLQLNSPYYHGVIVGAFTEIWNSLSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014411`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014411

Location Chr03:48680643-48681119 (-)

Description Similar to OFP6: Transcription repressor OFP6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52525`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At5g19650`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At2g18500`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At4g18830`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.2005 · DOI: 10.1073/pnas.0501181102 Cell-fate switch of synergid to egg cell in Arabidopsis eostre mutant embryo sacs arises from misexpression of the BEL1-like homeodomain gene BLH1.2007 · DOI: 10.1105/tpc.107.054890 Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0864000`	Probable transcriptional repressor that regulates multiple aspects of plant growth and development, partly through brassinosteroid (BR) signaling pathway.	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.2016 · DOI: 10.1371/journal.pgen.1006118

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014411 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1900457 regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0030863 cortical cytoskeleton Cellular Component

KEGG gene cross-reference

ath:AT2G18500

ath:AT3G52525

ath:AT4G18830

ath:AT5G19650

dosa:Os01g0864000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.393

Rank 1 · LXL04_014411 · OH-1004

Nucleus0.381

Rank 2 · LXL04_014411 · OH-1004

Cytoplasm0.363

Rank 3 · LXL04_014411 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_014411 · OH-1004

Plastid0.040

Rank 5 · LXL04_014411 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04844.19Ovate100-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014411	`PF04844.19`	Ovate	100	156	2.6e-25	88.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3EAL1`	Arabidopsis thaliana	Transcription repressor OFP6	44.966%	Swiss-Prot	moderate database homology
`Q3E9B4`	Arabidopsis thaliana	Transcription repressor OFP8	53.030%	Swiss-Prot	weak database homology
`Q9ZU65`	Arabidopsis thaliana	Transcription repressor OFP7	52.381%	Swiss-Prot	weak database homology
`Q8VZN1`	Arabidopsis thaliana	Transcription repressor OFP5	42.105%	Swiss-Prot	weak database homology
`Q94CV1`	Oryza sativa subsp. japonica	Transcription repressor OFP8	52.308%	Swiss-Prot	weak database homology

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