LXL04_014208 | RubberDandelionOmics

Gene overview

LXL04_014208

Reference: OH-1004 Chr: Chr03 Coordinates: 43653016-43660111 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1464 bp · LXL04_014208|LXL04_014208|OH1004|cDNA

ATGAAGAGAAGAAGGCTGTCACCAACTTCATCGTCATCCtgttcatcttcatcttcatgCATTAACGAACACCAGGTTCCGAAGCCCAAACGATCCTCTAGACCCCACAACAAGAACATCACTCTCAATTCAAATCAAAATGCTGCTGCTGAAAACACCCGCAGAAGCTCAATTTACAGAGGTGTTACCAGGCATAGATGGACAGGAAGATTTGAAGCACATCTATGGGACAAGGGTACATGGAACAACATCCAGAACAA...

CDS

Download CDS FASTA

1464 bp · LXL04_014208|LXL04_014208|OH1004|CDS

ATGAAGAGAAGAAGGCTGTCACCAACTTCATCGTCATCCTGTTCATCTTCATCTTCATGCATTAACGAACACCAGGTTCCGAAGCCCAAACGATCCTCTAGACCCCACAACAAGAACATCACTCTCAATTCAAATCAAAATGCTGCTGCTGAAAACACCCGCAGAAGCTCAATTTACAGAGGTGTTACCAGGCATAGATGGACAGGAAGATTTGAAGCACATCTATGGGACAAGGGTACATGGAACAACATCCAGAACAA...

Protein

Download Protein FASTA

487 aa · LXL04_014208|LXL04_014208|OH1004|PROTEIN

MKRRRLSPTSSSSCSSSSSCINEHQVPKPKRSSRPHNKNITLNSNQNAAAENTRRSSIYRGVTRHRWTGRFEAHLWDKGTWNNIQNKKGKQRAYDSEEAAARTYDLAALKYWGQDTTLNFEIDTYKKEIEEMEKLSKDEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYTRSSFLDESSAVMVANCCSILVKASDAAEDNFAEESLLVFDFFFALSLPMGKVRGGGMGRSSSWSSRIGHRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014208`
TK1151 ID	TkA02G447640
OH-1004 ID	LXL04_014208
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	72.700
Protein coverage (%)	TK1151 81.870 / OH-1004 81.109 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014208

Location Chr03:43653016-43660111 (-)

Description Similar to WRI1: Ethylene-responsive transcription factor WRI1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54320`	May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).	Contrapuntal networks of gene expression during Arabidopsis seed filling.2002 · DOI: 10.1105/tpc.000877 WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02235.x ACTIVATOR of Spomin::LUC1/WRINKLED1 of Arabidopsis thaliana transactivates sugar-inducible promoters.2005 · DOI: 10.1093/pcp/pci072 A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry.2006 · DOI: 10.1111/j.1365-313x.2006.02682.x WRI1 is required for seed germination and seedling establishment.2006 · DOI: 10.1104/pp.106.079574 wrinkled1: A novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism.1998 · DOI: 10.1104/pp.118.1.91
`At1g16060`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g51190`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g10510`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014208 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0006109 regulation of carbohydrate metabolic process Biological Process

GO:0006110 regulation of glycolytic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0007389 pattern specification process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009737 response to abscisic acid Biological Process

KEGG gene cross-reference

ath:AT1G16060

ath:AT1G51190

ath:AT3G54320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.927

Rank 1 · LXL04_014208 · OH-1004

Cytoplasm0.131

Rank 2 · LXL04_014208 · OH-1004

Cell membrane0.034

Rank 3 · LXL04_014208 · OH-1004

Endoplasmic reticulum0.031

Rank 4 · LXL04_014208 · OH-1004

Plastid0.022

Rank 5 · LXL04_014208 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP259-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014208	`PF00847.27`	AP2	59	113	2.2e-11	44.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6X5Y6`	Arabidopsis thaliana	Ethylene-responsive transcription factor WRI1	72.781%	Swiss-Prot	weak database homology
`Q94AN4`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor At1g16060	74.638%	Swiss-Prot	weak database homology
`Q5YGP7`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor PLT2	52.525%	Swiss-Prot	weak database homology
`Q52QU2`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor AIL6	63.448%	Swiss-Prot	weak database homology

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