LXL04_013679 | RubberDandelionOmics

Gene overview

LXL04_013679

Reference: OH-1004 Chr: Chr03 Coordinates: 34082607-34084046 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

765 bp · LXL04_013679|LXL04_013679|OH1004|cDNA

ATGGACGAATCAAATATCTCAGCAATGGAAAAAGGCGATGTTGTTTTCAGTTCTTCTCTAGCACTTTCCACGAATCCTATGATTGATTTGACCCAAAGGgTGTTAGCTGAGTTTATTGGAATGTATATTATTATGTTTGCCGGTTGTGGGTCGATAGCAGTGAATAAACTTTACGGTGGCACAGTCACTTTTCCTGGAATATGTCTTGTATGGGGCCTAATCGTAATGGCTATGATTTACTCTCTTGGTCACGTATCGGC...

CDS

Download CDS FASTA

765 bp · LXL04_013679|LXL04_013679|OH1004|CDS

ATGGACGAATCAAATATCTCAGCAATGGAAAAAGGCGATGTTGTTTTCAGTTCTTCTCTAGCACTTTCCACGAATCCTATGATTGATTTGACCCAAAGGGTGTTAGCTGAGTTTATTGGAATGTATATTATTATGTTTGCCGGTTGTGGGTCGATAGCAGTGAATAAACTTTACGGTGGCACAGTCACTTTTCCTGGAATATGTCTTGTATGGGGCCTAATCGTAATGGCTATGATTTACTCTCTTGGTCACGTATCGGC...

Protein

Download Protein FASTA

254 aa · LXL04_013679|LXL04_013679|OH1004|PROTEIN

MDESNISAMEKGDVVFSSSLALSTNPMIDLTQRVLAEFIGMYIIMFAGCGSIAVNKLYGGTVTFPGICLVWGLIVMAMIYSLGHVSAHFNPVVTIAFALLGLFPFKEVFYYVVSQILGAILGCGTVALIIDITPNAFFGTRPSGSIMQSFVVEIIVTFIMMFIVSGATNDHRAYKKYGGIIVGMTVTLNVLVAGPISGGSMNPARTLGPAIVLDSYKGIWVYIFGPLLGAIAGGFVYNLLKPTTKSFSELFKLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013679`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013679

Location Chr03:34082607-34084046 (+)

Description Similar to Probable aquaporin NIP-type

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g37820`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release
`At5g37810`	Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release
`At4g18910`	Water channel probably required to promote glycerol permeability and water transport across cell membranes.	Functional identification of the glycerol permease activity of Arabidopsis thaliana NLM1 and NLM2 proteins by heterologous expression in Saccharomyces cerevisiae.2000 · DOI: 10.1016/s0014-5793(00)02027-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0205000`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013679 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015700 arsenite transport Biological Process

GO:0046685 response to arsenic-containing substance Biological Process

GO:0080170 hydrogen peroxide transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015105 arsenite transmembrane transporter activity Molecular Function

GO:0015267 channel activity Molecular Function

KEGG gene cross-reference

ath:AT4G18910

ath:AT5G37810

ath:AT5G37820

dosa:Os05g0205000

osa:4338071

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.299

Rank 1 · LXL04_013679 · OH-1004

Endoplasmic reticulum0.287

Rank 2 · LXL04_013679 · OH-1004

Cell membrane0.159

Rank 3 · LXL04_013679 · OH-1004

Cytoplasm0.123

Rank 4 · LXL04_013679 · OH-1004

Mitochondrion0.087

Rank 5 · LXL04_013679 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230.26MIP29-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013679	`PF00230.26`	MIP	29	237	2.2e-53	182.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W036`	Arabidopsis thaliana	Probable aquaporin NIP4-2	53.668%	Swiss-Prot	strong database homology
`Q9FIZ9`	Arabidopsis thaliana	Putative aquaporin NIP4-1	53.282%	Swiss-Prot	strong database homology
`Q8LFP7`	Arabidopsis thaliana	Aquaporin NIP1-2	49.782%	Swiss-Prot	moderate database homology
`Q0DK16`	Oryza sativa subsp. japonica	Aquaporin NIP1-3	48.016%	Swiss-Prot	moderate database homology

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