LXL04_013503 | RubberDandelionOmics

Gene overview

LXL04_013503

Reference: OH-1004 Chr: Chr03 Coordinates: 30575526-30579388 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3570 bp · LXL04_013503|LXL04_013503|OH1004|cDNA

ATGGTTTCAAAAGTCGAAACAGTTATGGCGTCTTCCTCTTCAGCCTCTTTGAGCCTCAAGAAGTACGATGTTTTCTTGAGCTTCAGGGGTGAAGACACCCGGAAGAATTTCGTTGATCATATCTACTCGGCCCTACACCAAAAAGGGATTGTAACTTTTCAGGATGGCGAGAAACTCGAGAGAGGAAAATCAATCAGCCCTGAACTCTTGAAAGCCATCCGAGAATCATCCATAGCTGTCATCATATTCTCGAGAAACTA...

CDS

Download CDS FASTA

3570 bp · LXL04_013503|LXL04_013503|OH1004|CDS

ATGGTTTCAAAAGTCGAAACAGTTATGGCGTCTTCCTCTTCAGCCTCTTTGAGCCTCAAGAAGTACGATGTTTTCTTGAGCTTCAGGGGTGAAGACACCCGGAAGAATTTCGTTGATCATATCTACTCGGCCCTACACCAAAAAGGGATTGTAACTTTTCAGGATGGCGAGAAACTCGAGAGAGGAAAATCAATCAGCCCTGAACTCTTGAAAGCCATCCGAGAATCATCCATAGCTGTCATCATATTCTCGAGAAACTA...

Protein

Download Protein FASTA

1189 aa · LXL04_013503|LXL04_013503|OH1004|PROTEIN

MVSKVETVMASSSSASLSLKKYDVFLSFRGEDTRKNFVDHIYSALHQKGIVTFQDGEKLERGKSISPELLKAIRESSIAVIIFSRNYASSSWCLDELVEIIKQHKETNQIVYPVFHGVDPSEVRKQEGLFGEGFARHEGGKREVWRDALVEAANLSGWDTKAIANGHEAECVKSIIKDIQSTLYHKYSILEEKLIGIIPRVEKVKSLLKLELGEVRMIGIWGMGGAGKTTIARYLFNELANHFDATRFIGNVRETTEKSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013503`
TK1151 ID	TkA02G493200
OH-1004 ID	LXL04_013503
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.400
Protein coverage (%)	TK1151 95.164 / OH-1004 41.379 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013503

Location Chr03:30575526-30579388 (+)

Description Similar to ROQ1: Disease resistance protein Roq1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12010`	TIR-NB-LRR receptor-like protein involved in plant defense.	Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013503 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.387

Rank 1 · LXL04_013503 · OH-1004

Cell membrane0.372

Rank 2 · LXL04_013503 · OH-1004

Nucleus0.312

Rank 3 · LXL04_013503 · OH-1004

Endoplasmic reticulum0.071

Rank 4 · LXL04_013503 · OH-1004

Plastid0.042

Rank 5 · LXL04_013503 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR21-189 aa

PF13676.12TIR_224-117 aa

PF00931.29NB-ARC201-366 aa

PF23282.2WHD_ROQ1436-501 aa

PF23598.2LRR_14581-747 aa

PF12799.14LRR_4648-688 aa

PF23247.2LRR_RPS2670-782 aa

PF23286.1LRR_13695-780 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013503	`PF01582.26`	TIR	21	189	3.3e-50	171.1
LXL04_013503	`PF13676.12`	TIR_2	24	117	1.9e-15	58.1
LXL04_013503	`PF00931.29`	NB-ARC	201	366	3.2e-21	76.4
LXL04_013503	`PF23282.2`	WHD_ROQ1	436	501	1e-18	67.9
LXL04_013503	`PF23598.2`	LRR_14	581	747	3.9e-23	82.5
LXL04_013503	`PF12799.14`	LRR_4	648	688	1.8e-14	54.2
LXL04_013503	`PF23247.2`	LRR_RPS2	670	782	4.9e-07	30.5
LXL04_013503	`PF23286.1`	LRR_13	695	780	6e-16	59.5
LXL04_013503	`PF23598.2`	LRR_14	753	833	3.9e-23	82.5
LXL04_013503	`PF23598.2`	LRR_14	865	938	3.9e-23	82.5
LXL04_013503	`PF12799.14`	LRR_4	898	940	1.8e-14	54.2
LXL04_013503	`PF20160.5`	C-JID	997	1117	2.6e-08	34.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ66`	Arabidopsis thaliana	Disease resistance-like protein DSC1	34.191%	Swiss-Prot	moderate database homology

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