LXL04_013212 | RubberDandelionOmics

Gene overview

LXL04_013212

Reference: OH-1004 Chr: Chr03 Coordinates: 26035550-26036557 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

426 bp · LXL04_013212|LXL04_013212|OH1004|cDNA

AATAAGGTGAGCAGTTTGCTTTTAGTTTCAACGCGTATAACCCTTGCTCTCTCGTCTCCTTATTTCCTCCGCATCTCCTTTCAAATCCCTAATTCACTTTTCCGATCTGATTTTTCTCTCGATCTCTTGATAATGGATGCTTTGGATTCAGTCTTCGAGCCATTGAGAGAGTTCTCAAAGGATAGCTACCGTCTAGTTAAGAGATGCCACAAGCCTGATCGTAAAGAATTCTCGAAGGTTGCAGTTCCTCATCTTCATCC...

CDS

Download CDS FASTA

411 bp · LXL04_013212|LXL04_013212|OH1004|CDS

TTGCTTTTAGTTTCAACGCGTATAACCCTTGCTCTCTCGTCTCCTTATTTCCTCCGCATCTCCTTTCAAATCCCTAATTCACTTTTCCGATCTGATTTTTCTCTCGATCTCTTGATAATGGATGCTTTGGATTCAGTCTTCGAGCCATTGAGAGAGTTCTCAAAGGATAGCTACCGTCTAGTTAAGAGATGCCACAAGCCTGATCGTAAAGAATTCTCGAAGGTTGCAGTTCCTCATCTTCATCCCTATCAACAACATAA...

Protein

Download Protein FASTA

136 aa · LXL04_013212|LXL04_013212|OH1004|PROTEIN

MLLVSTRITLALSSPYFLRISFQIPNSLFRSDFSLDLLIMDALDSVFEPLREFSKDSYRLVKRCHKPDRKEFSKVAVPHLHPYQQHNCRICLEVIQSSRDRCRTIVVWLRSMMYCRVLFWFYVEVERDLLPNTLNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013212`
TK1151 ID	TkA02G511430
OH-1004 ID	LXL04_013212
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.100
Protein coverage (%)	TK1151 71.296 / OH-1004 56.618 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013212

Location Chr03:26035550-26036557 (+)

Description Similar to SEC61G2: Protein transport protein Sec61 subunit gamma-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50460`	Necessary for protein translocation in the endoplasmic reticulum.	No verified direct reference in this release
`At4g24920`	Necessary for protein translocation in the endoplasmic reticulum.	No verified direct reference in this release
`At3g48570`	Necessary for protein translocation in the endoplasmic reticulum.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0178400`	Necessary for protein translocation in the endoplasmic reticulum.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013212 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0030728 ovulation Biological Process

GO:0031204 post-translational protein targeting to membrane, translocation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005784 Sec61 translocon complex Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0071261 Ssh1 translocon complex Cellular Component

GO:0008320 protein transmembrane transporter activity Molecular Function

GO:0015450 protein-transporting ATPase activity Molecular Function

KEGG gene cross-reference

ath:AT3G48570

ath:AT4G24920

ath:AT5G50460

cel:CELE_F32D8.6

dosa:Os02g0178400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.320

Rank 1 · LXL04_013212 · OH-1004

Nucleus0.286

Rank 2 · LXL04_013212 · OH-1004

Endoplasmic reticulum0.251

Rank 3 · LXL04_013212 · OH-1004

Mitochondrion0.137

Rank 4 · LXL04_013212 · OH-1004

Golgi apparatus0.088

Rank 5 · LXL04_013212 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0DI75`	Arabidopsis thaliana	Protein transport protein Sec61 subunit gamma-2	81.579%	Swiss-Prot	weak database homology
`P0DI74`	Arabidopsis thaliana	Protein transport protein Sec61 subunit gamma-1	81.579%	Swiss-Prot	weak database homology
`Q9SMP2`	Arabidopsis thaliana	Protein transport protein Sec61 subunit gamma-3	71.053%	Swiss-Prot	weak database homology
`P38385`	Oryza sativa subsp. japonica	Protein transport protein Sec61 subunit gamma	83.784%	Swiss-Prot	weak database homology

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