LXL04_012917 | RubberDandelionOmics

Gene overview

LXL04_012917

Reference: OH-1004 Chr: Chr03 Coordinates: 20805318-20808675 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2182 bp · LXL04_012917|LXL04_012917|OH1004|cDNA

ATGGGCCCGGCTCATCCAATAAGAACAGTGCCTCTGAATGCACAGCATAAAACCAGACAAACCATCCTGACACTTTCTCCATTTTTACGCAACGCTAGGCTTGGTTTGGTTTGGCTGCGTCTTGGGATCTTCCGAAATCTGCCAGCCAATCCATCCCTAAAAAGGGGAAGGATTGAATCTTTAAGAATCTATCTTGAATCTAAGATAGAGCTAGATCTCTGTTTATCATCTATATGCTGGCAGGGGGCTATTGGAAATGG...

CDS

Download CDS FASTA

2166 bp · LXL04_012917|LXL04_012917|OH1004|CDS

ATGGGCCCGGCTCATCCAATAAGAACAGTGCCTCTGAATGCACAGCATAAAACCAGACAAACCATCCTGACACTTTCTCCATTTTTACGCAACGCTAGGCTTGGTTTGGTTTGGCTGCGTCTTGGGATCTTCCGAAATCTGCCAGCCAATCCATCCCTAAAAAGGGGAAGGATTGAATCTTTAAGAATCTATCTTGAATCTAAGATAGAGCTAGATCTCTGTTTATCATCTATATGCTGGCAGGGGGCTATTGGAAATGG...

Protein

Download Protein FASTA

721 aa · LXL04_012917|LXL04_012917|OH1004|PROTEIN

MGPAHPIRTVPLNAQHKTRQTILTLSPFLRNARLGLVWLRLGIFRNLPANPSLKRGRIESLRIYLESKIELDLCLSSICWQGAIGNGGRSGFRSLVRRKRVDSKYTKSSDPGHHQLAKELSIAHLIAIGVGSTIGAGVYILVGTVAREHSGPALAFSFLIAGIAAALSAFCYAELASRCPSAGSAYHYSYICLGEGLAWIIGWALILEYTIGGSAVARGISPNLALLFGGPDSLPFFLARHHIPALGIVVDPCAAFLVFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012917`
TK1151 ID	TkA02G530730
OH-1004 ID	LXL04_012917
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 96.960 / OH-1004 87.933 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012917

Location Chr03:20805318-20808675 (-)

Description Similar to CAT2: Cationic amino acid transporter 2, vacuolar

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58030`	Permease involved in the transport of the cationic amino acids.	No verified direct reference in this release
`At5g36940`	Permease involved in the transport of the cationic neutral or acidic amino acids.	Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278
`At3g03720`	Permease involved in the transport of the cationic amino acids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012917 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006865 amino acid transport Biological Process

GO:0015807 L-amino acid transport Biological Process

GO:0015819 lysine transport Biological Process

GO:0015822 ornithine transport Biological Process

GO:0032006 regulation of TOR signaling Biological Process

GO:0080144 intracellular amino acid homeostasis Biological Process

GO:0089718 amino acid import across plasma membrane Biological Process

GO:0097638 L-arginine import across plasma membrane Biological Process

GO:0097639 L-lysine import across plasma membrane Biological Process

GO:1903352 L-ornithine transmembrane transport Biological Process

GO:1903401 L-lysine transmembrane transport Biological Process

GO:1903810 L-histidine import across plasma membrane Biological Process

KEGG gene cross-reference

ath:AT1G58030

ath:AT3G03720

ath:AT5G36940

mmu:11987

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.359

Rank 1 · LXL04_012917 · OH-1004

Cell membrane0.289

Rank 2 · LXL04_012917 · OH-1004

Endoplasmic reticulum0.187

Rank 3 · LXL04_012917 · OH-1004

Cytoplasm0.125

Rank 4 · LXL04_012917 · OH-1004

Golgi apparatus0.125

Rank 5 · LXL04_012917 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520.13AA_permease_2123-502 aa

PF00324.28AA_permease124-496 aa

PF13906.13AA_permease_C645-695 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012917	`PF13520.13`	AA_permease_2	123	502	6.4e-51	174.3
LXL04_012917	`PF00324.28`	AA_permease	124	496	1.6e-39	136.6
LXL04_012917	`PF13906.13`	AA_permease_C	645	695	4.5e-20	72.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ASS7`	Arabidopsis thaliana	Cationic amino acid transporter 2, vacuolar	69.014%	Swiss-Prot	strong database homology
`Q8GYB4`	Arabidopsis thaliana	Cationic amino acid transporter 3, mitochondrial	67.512%	Swiss-Prot	strong database homology
`Q8W4K3`	Arabidopsis thaliana	Cationic amino acid transporter 4, vacuolar	63.622%	Swiss-Prot	strong database homology

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