LXL04_012913 | RubberDandelionOmics

Gene overview

LXL04_012913

Reference: OH-1004 Chr: Chr03 Coordinates: 20779676-20785546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3081 bp · LXL04_012913|LXL04_012913|OH1004|cDNA

ATGGATTCGTTAAAACTTAAAAGCAAACTTAAAATTTGTATTCTTCCTCAAAGAAACCGCAGCTTCTCGTTTTCGGAATCGCAATCGGATTCGGAGTCGGGTCATGTCCTGTCTCAAACAGGAGAACGATTTAAATATCTAAAACACAAAACCCCAGAATCTTGTGAACTTCCGGTGATCACCCAAATGTCCATTCCCTGCCAATCATCTTATTCTTTCCTTCCTGCCATCATCTCCCCCACTCGTACTCCGCCCGCCCG...

CDS

Download CDS FASTA

3081 bp · LXL04_012913|LXL04_012913|OH1004|CDS

ATGGATTCGTTAAAACTTAAAAGCAAACTTAAAATTTGTATTCTTCCTCAAAGAAACCGCAGCTTCTCGTTTTCGGAATCGCAATCGGATTCGGAGTCGGGTCATGTCCTGTCTCAAACAGGAGAACGATTTAAATATCTAAAACACAAAACCCCAGAATCTTGTGAACTTCCGGTGATCACCCAAATGTCCATTCCCTGCCAATCATCTTATTCTTTCCTTCCTGCCATCATCTCCCCCACTCGTACTCCGCCCGCCCG...

Protein

Download Protein FASTA

1026 aa · LXL04_012913|LXL04_012913|OH1004|PROTEIN

MDSLKLKSKLKICILPQRNRSFSFSESQSDSESGHVLSQTGERFKYLKHKTPESCELPVITQMSIPCQSSYSFLPAIISPTRTPPARFHFRIPNKKTRPNGFSTQLGHGLPLTTKRRTRTHHSYCSSSTMAVKEPASSPLQDSLSYSRAYWVSRSLIAWNVDAVNGSCFLYSSTSAALSVTENGIEGSDFNIKLERHDQRLPENVKDKFPHIQDYNAFKIPTSLDPKSILKDQLAVAFFDSNGQCINVTGLQLPGVLDDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012913`
TK1151 ID	TkA02G530850
OH-1004 ID	LXL04_012913
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.400
Protein coverage (%)	TK1151 100.000 / OH-1004 93.957 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012913

Location Chr03:20779676-20785546 (-)

Description Similar to PU1: Pullulanase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04360`	Involved in starch degradation and also probably in the trimming of pre-amylopectin chains during starch synthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012913 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0005983 starch catabolic process Biological Process

GO:0019252 starch biosynthetic process Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0010303 limit dextrinase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0051060 pullulanase activity Molecular Function

KEGG gene cross-reference

ag:AAA25124

ath:AT5G04360

bsu:BSU29930

tma:TM1845

tmi:THEMA_04980

tmm:Tmari_1853

tmw:THMA_1888

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.871

Rank 1 · LXL04_012913 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_012913 · OH-1004

Mitochondrion0.053

Rank 3 · LXL04_012913 · OH-1004

Peroxisome0.045

Rank 4 · LXL04_012913 · OH-1004

Cell membrane0.043

Rank 5 · LXL04_012913 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17967.8Pullulanase_N2147-259 aa

PF02922.25CBM_48266-351 aa

PF11852.15Pullul_strch_C851-1020 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012913	`PF17967.8`	Pullulanase_N2	147	259	1e-32	114.0
LXL04_012913	`PF02922.25`	CBM_48	266	351	6.6e-07	30.3
LXL04_012913	`PF11852.15`	Pullul_strch_C	851	1020	1.8e-62	210.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GTR4`	Arabidopsis thaliana	Pullulanase 1, chloroplastic	71.029%	Swiss-Prot	strong database homology

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