LXL04_012837 | RubberDandelionOmics

Gene overview

LXL04_012837

Reference: OH-1004 Chr: Chr03 Coordinates: 19597827-19600151 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

771 bp · LXL04_012837|LXL04_012837|OH1004|cDNA

ATGAAGAAATGTGATGATGCATGTGGGCATCAATGCATCATTATGGTTACTTCACTTCACTTTCATCCAACAAAAACACTATACCCCATGGCTATAACCATGTTTCCCAAAATCGCACTTTTCTTCGCTTTTTTCATCTCGTCGTCGGTTTTTGGCTCAGACCCCGACCCACTACAAGACTACTGTTTACCCTCGAATCACACCCACCTATGCAAAAACTCCTCATCTCTCACCGTCGACGATTTCGTATTTTCCGGCAT...

CDS

Download CDS FASTA

771 bp · LXL04_012837|LXL04_012837|OH1004|CDS

ATGAAGAAATGTGATGATGCATGTGGGCATCAATGCATCATTATGGTTACTTCACTTCACTTTCATCCAACAAAAACACTATACCCCATGGCTATAACCATGTTTCCCAAAATCGCACTTTTCTTCGCTTTTTTCATCTCGTCGTCGGTTTTTGGCTCAGACCCCGACCCACTACAAGACTACTGTTTACCCTCGAATCACACCCACCTATGCAAAAACTCCTCATCTCTCACCGTCGACGATTTCGTATTTTCCGGCAT...

Protein

Download Protein FASTA

256 aa · LXL04_012837|LXL04_012837|OH1004|PROTEIN

MKKCDDACGHQCIIMVTSLHFHPTKTLYPMAITMFPKIALFFAFFISSSVFGSDPDPLQDYCLPSNHTHLCKNSSSLTVDDFVFSGIKHPGEFTNKFSGVPVTSTVFPALNTLGMSLVRADFEVGGINAPHYHPRATEVAYVLEGKLYSGFVDTGNRVFAKVIEKGEVMVFPTGVLHFQMNVGDSPATVIGSFDSQNPGSVKLPVALFGSDIDSELLEKAFGLKGKEVSKLKKRFGIKKEENPRQAPMATISRTMV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012837`
TK1151 ID	TkA02G535810
OH-1004 ID	LXL04_012837
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 88.672 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012837

Location Chr03:19597827-19600151 (+)

Description Similar to At3g10080: Germin-like protein subfamily 3 member 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10080`	May play a role in plant defense.	No verified direct reference in this release
`At1g02335`	May play a role in plant defense.	No verified direct reference in this release
`At1g09560`	May play a role in plant defense.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0532500`	May play a role in plant defense.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012837 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004784 superoxide dismutase activity Molecular Function

GO:0030145 manganese ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G02335

ath:AT1G09560

ath:AT3G10080

dosa:Os02g0532500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.429

Rank 1 · LXL04_012837 · OH-1004

Lysosome / Vacuole0.224

Rank 2 · LXL04_012837 · OH-1004

Endoplasmic reticulum0.169

Rank 3 · LXL04_012837 · OH-1004

Cytoplasm0.115

Rank 4 · LXL04_012837 · OH-1004

Cell membrane0.102

Rank 5 · LXL04_012837 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00190.29Cupin_1101-228 aa

PF07883.18Cupin_2120-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012837	`PF00190.29`	Cupin_1	101	228	9.2e-43	146.1
LXL04_012837	`PF07883.18`	Cupin_2	120	190	4.3e-10	39.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SR72`	Arabidopsis thaliana	Germin-like protein subfamily 3 member 2	56.853%	Swiss-Prot	strong database homology
`Q9FZ27`	Arabidopsis thaliana	Germin-like protein subfamily 2 member 2	41.743%	Swiss-Prot	moderate database homology
`P94014`	Arabidopsis thaliana	Germin-like protein subfamily 2 member 1	44.444%	Swiss-Prot	moderate database homology
`Q6ESF0`	Oryza sativa subsp. japonica	Germin-like protein 2-4	51.741%	Swiss-Prot	strong database homology

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