Gene Card
Gene overview
cDNA / CDS / Protein Sequences
450 bp · LXL04_012774|LXL04_012774|OH1004|cDNA
ATGCCGTCACCACCGAGATCATCTGGCTCCCCCATATCTCGACTCCCTCTACTCTTTAAGCGCACATTCTTCCTTTCAATACCATTGTATCTAAAAGTTATTGTATCTATCTTGACTGCGGATGACGATGCCGGTGTTGGGTGCAAGAATACCCTGAAAGAAATTTCCGACGAGCAATCAGACACCAGCGCAGCCGACGGGAGCAAAAACCTAATTTTCGAGGCAATGGCCTTTGTGTATATTCCGGTACAGAATTCGGA...
450 bp · LXL04_012774|LXL04_012774|OH1004|CDS
ATGCCGTCACCACCGAGATCATCTGGCTCCCCCATATCTCGACTCCCTCTACTCTTTAAGCGCACATTCTTCCTTTCAATACCATTGTATCTAAAAGTTATTGTATCTATCTTGACTGCGGATGACGATGCCGGTGTTGGGTGCAAGAATACCCTGAAAGAAATTTCCGACGAGCAATCAGACACCAGCGCAGCCGACGGGAGCAAAAACCTAATTTTCGAGGCAATGGCCTTTGTGTATATTCCGGTACAGAATTCGGA...
Protein
Download Protein FASTA149 aa · LXL04_012774|LXL04_012774|OH1004|PROTEIN
MPSPPRSSGSPISRLPLLFKRTFFLSIPLYLKVIVSILTADDDAGVGCKNTLKEISDEQSDTSAADGSKNLIFEAMAFVYIPVQNSEEEVRVALDQLPRDATDILDILKAEQAPLDLWLIIAVMILIHKVYDEAVEFVGPGCGGNILHG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012774 |
|---|---|
| TK1151 ID | TkA01G454320 |
| OH-1004 ID | LXL04_012774 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 95.700 |
| Protein coverage (%) | TK1151 6.571 / OH-1004 46.309Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012774 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr03:18527606-18528413 (-) | ||||||
| Description | Similar to VIP6: Protein CTR9 homolog | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0009908 flower development Biological Process GO:0009910 negative regulation of flower development Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0005634 nucleus Cellular Component GO:0016593 Cdc73/Paf1 complex Cellular Component GO:0000993 RNA polymerase II complex binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT2G06210 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
B5X0I6 | Arabidopsis thaliana | Protein CTR9 homolog | 93.617% | Swiss-Prot | weak database homology |