LXL04_012749 | RubberDandelionOmics

Gene overview

LXL04_012749

Reference: OH-1004 Chr: Chr03 Coordinates: 18104787-18107353 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1807 bp · LXL04_012749|LXL04_012749|OH1004|cDNA

TACGTATGATCAGCAGAGAAAAACCAAGAAGAATATTAGATTTTCAAGCCATTTCCCCCTCCAAGTTTTGTTGTCGTTTTCTTCTGAAATCCTATTTCATAAAATCTAATGCATGGCTCCCCTAACATAATGCTTCATGCAGTTACATATTGGAAAAACCTGAAAATCTTATTTCCAATTTCCACACCATTTTATTAAATTAGACTCCGAGAAGATGAAACTGAGTCCCTTTTCGAGGTTCGGATTTGGATTGATTCTCT...

CDS

Download CDS FASTA

1593 bp · LXL04_012749|LXL04_012749|OH1004|CDS

ATGAAACTGAGTCCCTTTTCGAGGTTCGGATTTGGATTGATTCTCTTATTATCTCTGAATCAAATTCCACCAACAGCTTCTGCTTCAAAATCGAAGGAAGCGTATGTAACTCTTTTATACGGAGATGAATTCGTGTTGGGAGCACGTGTTCTTGGGAAGTCGATTCGGGATACCAGATCCACCAAAGACATGGTCGTTTTGGTCTCCGATGGTGTTTCCGACTACGCCAAAACTCTTCTCCAGGCTGATGGCTGGATTGT...

Protein

Download Protein FASTA

530 aa · LXL04_012749|LXL04_012749|OH1004|PROTEIN

MKLSPFSRFGFGLILLLSLNQIPPTASASKSKEAYVTLLYGDEFVLGARVLGKSIRDTRSTKDMVVLVSDGVSDYAKTLLQADGWIVNPISLLENPNQVRPTRFWGVYTKLKIFNMTDYSKVVYLDADTIVVKNIDVLFKCGKFCANLKHSERLNSGVMVVEPSEKLFKDMVSKVATLHSYTGGDQGFLNAYYSGFPSARIFDPTKTRPVAEMERLSTLYNADVGLYMLANKWMVDEKELCVIHYTLGPLKPWDWWTSWL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012749`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012749

Location Chr03:18104787-18107353 (+)

Description Similar to IPUT1: Inositol phosphorylceramide glucuronosyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18480`	Mediates the transfer of glucuronic acid (GlcA) from UDP-GlcA to glycosyl inositol phosphorylceramides (GIPCs).	Identification of a sphingolipid α-glucuronosyltransferase that is essential for pollen function in Arabidopsis.2014 · DOI: 10.1105/tpc.114.129171 Glycosylation of inositol phosphorylceramide sphingolipids is required for normal growth and reproduction in Arabidopsis.2017 · DOI: 10.1111/tpj.13382
`At1g77130`	May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.	No verified direct reference in this release
`At1g08990`	May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.	No verified direct reference in this release
`At3g18660`	Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls.	Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass.2010 · DOI: 10.1073/pnas.1005456107 An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development.2010 · DOI: 10.1371/journal.pone.0015481
`At2g35710`	Putative glucuronosyltransferase PGSIP8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012749 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006673 inositol phosphoceramide metabolic process Biological Process

GO:0009555 pollen development Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0046513 ceramide biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G08990

ath:AT1G77130

ath:AT2G35710

ath:AT3G18660

ath:AT5G18480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.560

Rank 1 · LXL04_012749 · OH-1004

Endoplasmic reticulum0.176

Rank 2 · LXL04_012749 · OH-1004

Lysosome / Vacuole0.130

Rank 3 · LXL04_012749 · OH-1004

Cytoplasm0.101

Rank 4 · LXL04_012749 · OH-1004

Cell membrane0.078

Rank 5 · LXL04_012749 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01501.27Glyco_transf_837-140 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012749	`PF01501.27`	Glyco_transf_8	37	140	2.6e-11	44.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GWB7`	Arabidopsis thaliana	Inositol phosphorylceramide glucuronosyltransferase 1	64.419%	Swiss-Prot	strong database homology
`Q8W4A7`	Arabidopsis thaliana	Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3	34.800%	Swiss-Prot	weak database homology
`F4HZC3`	Arabidopsis thaliana	Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5	42.353%	Swiss-Prot	weak database homology
`Q9LSB1`	Arabidopsis thaliana	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1	36.364%	Swiss-Prot	weak database homology
`Q8VZP6`	Arabidopsis thaliana	Putative glucuronosyltransferase PGSIP8	32.422%	Swiss-Prot	weak database homology

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